View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15842_low_2 (Length: 467)

Name: NF15842_low_2
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15842_low_2
NF15842_low_2
[»] chr7 (11 HSPs)
chr7 (10-451)||(4195635-4196073)
chr7 (10-451)||(4233384-4233819)
chr7 (38-400)||(4250437-4250799)
chr7 (10-451)||(4188746-4189181)
chr7 (25-443)||(4191898-4192313)
chr7 (54-451)||(4241213-4241607)
chr7 (61-280)||(4094835-4095054)
chr7 (61-280)||(4121860-4122079)
chr7 (327-451)||(4095113-4095237)
chr7 (95-247)||(4102417-4102569)
chr7 (324-404)||(4102642-4102722)


Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Original strand, 4195635 - 4196073
Alignment:
Q  10 catcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacactctccc 109  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4195635 catcatcaacccaaaaaaca---acaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctccc 4195731  T
Q  110 aaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaatactttcttcctttagctggt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4195732 aaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggt 4195831  T
Q  210 aaactcgtttggccttctgattctccataaccattcatccaattcaatccaaatgatgatggagtttcctttatcattgcagagtctgatttagatttca 309  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4195832 aaaatcgtttggccttctgattctccacaaccattcatccaattcaatccaaatgatgatggagtttcctttatcattgcagagtctgatttagatttca 4195931  T
Q  310 atcatgctattgaaaaatcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaacagattcttttgcttctattatttcaattca 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  4195932 atcatgctattgaaaaatcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaactgattcttttgcttctattatctcaattca 4196031  T
Q  410 gataaccttttttccggaaagtggtttttccattggaataag 451  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4196032 gataaccttttttccggaaagtggtttttccattggaataag 4196073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 451
Target Start/End: Original strand, 4233384 - 4233819
Alignment:
Q  10 catcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacactctccc 109  Q
    |||||||||| |||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |||||    
T  4233384 catcatcaactcaaaaaaca---acaacccctcttacttactttgacatattttggctaaggttccatccagtagaacgtgttttcttctacgccctccc 4233480  T
Q  110 aaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaatactttcttcctttagctggt 209  Q
    |||||||||||||||| |||||||||| ||| | || |||||||||||||||||||||||| |||||||||||||| |  ||||||| ||||||||||||    
T  4233481 aaattcacattcacacccttctttcttcttcaagaagcttgttccaattctcaaatcttcactctctttaaccctcaaggactttctccctttagctggt 4233580  T
Q  210 aaactcgtttggccttctgattctccataaccattcatccaattcaatccaaatgatgatggagtttcctttatcattgcagagtctgatttagatttca 309  Q
    ||  ||||||||||||  || |||| | ||||| | |||||||  | |||||   |||||||||||||||| |||||||||||||| ||| |||||||||    
T  4233581 aacatcgtttggcctttagaatctcaagaaccaataatccaatatactccaa---atgatggagtttccttgatcattgcagagtccgatgtagatttca 4233677  T
Q  310 atcatgctattgaaaaatcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaacagattcttttgcttctattatttcaattca 409  Q
    ||||||  |||||||| |||||||| || |||||||||||||| | |||| |||||||||| ||||| ||| ||||||||||||||||||| ||| ||||    
T  4233678 atcatgtcattgaaaattcaccccacgatgcttctttgtctcgttgttttgtaccacatttagaatcgacaaattcttttgcttctattatctcagttca 4233777  T
Q  410 gataaccttttttccggaaagtggtttttccattggaataag 451  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  4233778 gataaccctttttccagaaagtggtttttccattggaataag 4233819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 38 - 400
Target Start/End: Original strand, 4250437 - 4250799
Alignment:
Q  38 ccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacactctcccaaattcacattcacacacttctttcttt 137  Q
    ||||||||||| ||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||     
T  4250437 ccctcttactttcttcgacatattttggctaaggttccatccagtagaacgagttttcttctacaccctcccaaattcacaatcacacccttctttcttc 4250536  T
Q  138 ttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaatactttcttcctttagctggtaaactcgtttggccttctgattctccat 237  Q
    || ||||   ||||||||| ||||||||| ||| ||||||||||||||||| | ||||| ||||||||||||||  |||||||||||||||||||| ||     
T  4250537 tttcaaacgattgttccaaatctcaaatcatcactctctttaaccctccaacattttctccctttagctggtaacatcgtttggccttctgattcttcaa 4250636  T
Q  238 aaccattcatccaattcaatccaaatgatgatggagtttcctttatcattgcagagtctgatttagatttcaatcatgctattgaaaaatcaccccatga 337  Q
    ||||  |||| |||||  |||| || |||||||||||||| || ||||||||||| ||||||| ||||||||||||||   ||||||| |||||||||||    
T  4250637 aacccatcattcaatttgatcccaacgatgatggagtttcgttgatcattgcagaatctgattcagatttcaatcatgtcgttgaaaactcaccccatga 4250736  T
Q  338 agcttctttgtctcgctcttttataccacatttggaatcaacagattcttttgcttctattat 400  Q
    ||||||||||||||| ||||||||||| || || |||||| ||||||||||||||||||||||    
T  4250737 agcttctttgtctcgttcttttataccccacttagaatcatcagattcttttgcttctattat 4250799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 10 - 451
Target Start/End: Original strand, 4188746 - 4189181
Alignment:
Q  10 catcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacactctccc 109  Q
    |||||||||||||||   | |||||||  ||| | |||| ||| |||||||||||| | | |||||||||  |||||||  | ||||| ||||| |||||    
T  4188746 catcatcaacccaaa---ctacaacaattcctttcactttcttcgacatattttggataaagttccatcctatagaacgaatcttcttttacaccctccc 4188842  T
Q  110 aaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaatactttcttcctttagctggt 209  Q
    ||||||||| |||||| |||||||||| || |||||||| ||||||||||||| ||| ||| ||||||||||||||||| ||||||| ||||||||||||    
T  4188843 aaattcacaatcacacccttctttcttctttcaaaaactagttccaattctcagatcatcactctctttaaccctccaacactttctccctttagctggt 4188942  T
Q  210 aaactcgtttggccttctgattctccataaccattcatccaattcaatccaaatgatgatggagtttcctttatcattgcagagtctgatttagatttca 309  Q
    ||| | |||||||| || || |||| | |||||   ||||| | ||   ||||||||| ||   |||| ||  |||||||||||||||||  ||||||||    
T  4188943 aaaattgtttggccatcagaatctcaacaaccaaaaatccagtacacaacaaatgatggtg---tttcattgctcattgcagagtctgatgcagatttca 4189039  T
Q  310 atcatgctattgaaaaatcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaacagattcttttgcttctattatttcaattca 409  Q
     |||||  |||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||||||||    
T  4189040 gtcatgtgattgaaaactcacctcatgaagcttctttgtctcgttcttttctaccacatttggaatcaacagattcatctgcttctattatttcaattca 4189139  T
Q  410 gataaccttttttccggaaagtggtttttccattggaataag 451  Q
    ||||||| |||||||  |||||||||||||||||||||||||    
T  4189140 gataaccctttttccaaaaagtggtttttccattggaataag 4189181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 25 - 443
Target Start/End: Original strand, 4191898 - 4192313
Alignment:
Q  25 aaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacactctcccaaattcacattcaca 124  Q
    |||| ||||||  |||||| |||| ||| |||||||| ||||| | | |  |||| || |||||||||||||||||||| ||||||| |||||| |||||    
T  4191898 aaacgacaacattccctctcactttcttcgacatattatggctaaaggtatatccagtggaacgtgttttcttctacaccctcccaagttcacaatcaca 4191997  T
Q  125 cacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaatactttcttcctttagctggtaaactcgtttggcct 224  Q
    | |||||||||| |||||||| |||||| |||||||||||||||||  ||||||||||||| || ||||||| ||||||||||||||  |  ||||||||    
T  4191998 cccttctttcttcttccaaaagcttgttacaattctcaaatcttcaccctctttaaccctcaaacactttctccctttagctggtaagataatttggcct 4192097  T
Q  225 tctgattctccataaccattcatccaattcaatccaaatgatgatggagtttcctttatcattgcagagtctgatttagatttcaatcatgctattgaaa 324  Q
    || || |||| | ||||| | |||| ||  |  ||||   ||||||| || |||||  | |||||||||||| |  | |||||| |||| |   ||||||    
T  4192098 tccgagtctcaacaaccaataatcctatatacaccaa---atgatggtgtctccttgctaattgcagagtctaaagttgatttcgatcaagtcgttgaaa 4192194  T
Q  325 aatcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaacagattcttttgcttctattatttcaattcagataaccttttttcc 424  Q
    | |||||| ||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||||     
T  4192195 actcacccgatgaagcttctttgtctcgttcttttataccgcatttggaatccgcagattcttttgcttctattatttcagttcagataaccctttttca 4192294  T
Q  425 ggaaagtggtttttccatt 443  Q
      |||||||||||||||||    
T  4192295 aaaaagtggtttttccatt 4192313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 54 - 451
Target Start/End: Original strand, 4241213 - 4241607
Alignment:
Q  54 gacatattttggcttaggttccatccggtagaacgtgttttcttctacactctcccaaattcacattcacacacttctttctttttccaaaaacttgttc 153  Q
    |||||||||||||| |||||||||||  |||||    | || |||||||| |||||||||||||| ||| ||||||| ||||| || |||| | ||||||    
T  4241213 gacatattttggctaaggttccatccaatagaatacatcttattctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttc 4241312  T
Q  154 caattctcaaatcttcattctctttaaccctccaatactttcttcctttagctggtaaactcgtttggccttctgattctccataaccattcatccaatt 253  Q
    ||| ||| ||||||||| | ||||| ||||||||| |||||||||||||||| |||||  ||||||||  || ||| || | | | |||   || ||||     
T  4241313 caaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaacatcgtttgggattttgaatcacaaaacccaaaaatacaata 4241412  T
Q  254 caatccaaatgatgatggagtttcctttatcattgcagagtctgatttagatttcaatcatgctattgaaaaatcaccccatgaagcttctttgtctcgc 353  Q
    ||  |||||||||| ||   |||||||  |||||||||||||||||||||||||||||||||  |||||||| |||||  | ||||||| |||||||||     
T  4241413 cacaccaaatgatggtg---tttccttgctcattgcagagtctgatttagatttcaatcatgtcattgaaaactcaccaaaagaagcttatttgtctcgt 4241509  T
Q  354 tcttttataccacatttggaatcaacagattcttttgcttctattatttcaattcagataaccttttttccggaaagtggtttttccattggaataag 451  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||| ||| | || |||||  |||||||  || ||||||||||||||||||||||    
T  4241510 tcttttataccacatttgaaatcaacaaattcttttgcttctattatctcactccaaataactctttttccaaaacgtggtttttccattggaataag 4241607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 61 - 280
Target Start/End: Original strand, 4094835 - 4095054
Alignment:
Q  61 tttggcttaggttccatccggtagaacgtgttttcttctacactctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattct 160  Q
    ||||||| || || ||||||||||||||| ||||||||||||| ||||||| |||||| |||||| || |||| || ||| |||| ||||||||||  ||    
T  4094835 tttggctaagatttcatccggtagaacgtattttcttctacaccctcccaagttcacactcacaccctacttttttcttcgaaaatcttgttccaaaact 4094934  T
Q  161 caaatcttcattctctttaaccctccaatactttcttcctttagctggtaaactcgtttggccttctgattctccataaccattcatccaattcaatcca 260  Q
    |||||||||| |||||||||| || ||| |||| || ||||||||||||||  ||||||||||||| ||||||||  |||||||| ||||||||||||||    
T  4094935 caaatcttcactctctttaactctacaacacttcctccctttagctggtaacatcgtttggccttcggattctcctaaaccattcctccaattcaatcca 4095034  T
Q  261 aatgatgatggagtttcctt 280  Q
    |||||||| |||||||||||    
T  4095035 aatgatgacggagtttcctt 4095054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 61 - 280
Target Start/End: Original strand, 4121860 - 4122079
Alignment:
Q  61 tttggcttaggttccatccggtagaacgtgttttcttctacactctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattct 160  Q
    ||||||| ||||| ||||| || |||||| | ||||||||||| |||||||||||||| |||||| ||||||||||| |  |||| ||||||||||  ||    
T  4121860 tttggctaaggtttcatccagttgaacgtatcttcttctacaccctcccaaattcacaatcacacccttctttctttgttgaaaaccttgttccaaaact 4121959  T
Q  161 caaatcttcattctctttaaccctccaatactttcttcctttagctggtaaactcgtttggccttctgattctccataaccattcatccaattcaatcca 260  Q
    |||||||||| ||||||||||||||||| | || |  ||||||||||||||  |||||||||||||| |||||||| ||||| ||||||| |||||||||    
T  4121960 caaatcttcactctctttaaccctccaaaaattcccacctttagctggtaacatcgtttggccttctaattctccaaaaccaatcatccagttcaatcca 4122059  T
Q  261 aatgatgatggagtttcctt 280  Q
    ||||| || |||||||||||    
T  4122060 aatgaagacggagtttcctt 4122079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 327 - 451
Target Start/End: Original strand, 4095113 - 4095237
Alignment:
Q  327 tcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaacagattcttttgcttctattatttcaattcagataaccttttttccgg 426  Q
    ||||| || ||||||||||||||||| |||||| |||| || || |||||| |||||||||||||||||||||||||||||||||||||| ||||||||     
T  4095113 tcaccacaagaagcttctttgtctcgttcttttgtacctcacttagaatcatcagattcttttgcttctattatttcaattcagataaccctttttccga 4095212  T
Q  427 aaagtggtttttccattggaataag 451  Q
    ||| |||||||||||||||||||||    
T  4095213 aaaatggtttttccattggaataag 4095237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 4102417 - 4102569
Alignment:
Q  95 cttctacactctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaatacttt 194  Q
    ||||||||| |||||||||||||| |||||| |||||| ||||||  |||| ||||||||||  ||||||| |||| ||||||||||||||||| ||||     
T  4102417 cttctacaccctcccaaattcacaatcacacccttcttacttttttgaaaaccttgttccaaaactcaaatattcactctctttaaccctccaaaacttc 4102516  T
Q  195 cttcctttagctggtaaactcgtttggccttctgattctccataaccattcat 247  Q
    || ||||||||||||||  |||||||||||| |||||||||| || |||||||    
T  4102517 ctccctttagctggtaacatcgtttggccttttgattctccaaaatcattcat 4102569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 404
Target Start/End: Original strand, 4102642 - 4102722
Alignment:
Q  324 aaatcaccccatgaagcttctttgtctcgctcttttataccacatttggaatcaacagattcttttgcttctattatttca 404  Q
    |||||||| || ||||||||||||||||| || ||| |||| || || ||||||||||||||||||||||| |||||||||    
T  4102642 aaatcaccacaagaagcttctttgtctcgttcgtttgtacctcacttagaatcaacagattcttttgcttccattatttca 4102722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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