View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15842_low_23 (Length: 221)
Name: NF15842_low_23
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15842_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 16690848 - 16690662
Alignment:
| Q |
17 |
ttattctaagtatgatttttgtttttcaaacttgttagctttcaagagattgtccctttgaatgctggaaatgtgcttgtattagaggacaatgaacctg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16690848 |
ttattctaagtatgatttttgtttttcaaacttgttagctttcaagagattgtccctttgaatgctggaaatgtgcttgtattagaggacaatgaacctg |
16690749 |
T |
|
| Q |
117 |
ctgcgaaatggcttgccttaatcaatcaatcactcaatggtccttcagatttctcttctaataaagggctaaaacctactgcatcat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
16690748 |
ctgcgaaatggcttgccttaatcaatcaatcactcaatggtccttcagatttctcttcaaataaagggctaaaacccactgcatcat |
16690662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University