View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15842_low_25 (Length: 208)
Name: NF15842_low_25
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15842_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 36835862 - 36835688
Alignment:
| Q |
18 |
tttatgttcaagatcatttgcaattttgttagctaaacaagatggcttgtcagttttatctaggataggaaggtttagaacttttctgtaagtgttgatg |
117 |
Q |
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| T |
36835862 |
tttatgttcaagatcatttgcaattttgttggctaaacaagatggcttgtcagttttctctaggataggaaggtttagaacttttctgtatgtgttgatg |
36835763 |
T |
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| Q |
118 |
tcatgaagtagatccttctccttctctgcatggaaaatagacagnnnnnnncacacatattagactttatatttt |
192 |
Q |
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| T |
36835762 |
tcatgaagtagatccttctccttctctgcatggaaaatagacagaaaaaaacacacatattagactttatatttt |
36835688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 36847321 - 36847209
Alignment:
| Q |
19 |
ttatgttcaagatcatttgcaattttgttagctaaacaagatggcttgtcagttttatctaggataggaaggtttagaacttttctgtaagtgttgatgt |
118 |
Q |
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| T |
36847321 |
ttatcttctagatcatatgcaattctgttggctaaacaagatgccttgtagtttttctcaaggatagggaggttgagagcttttctgtaagtgttgatat |
36847222 |
T |
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| Q |
119 |
catgaagtagatc |
131 |
Q |
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| T |
36847221 |
catgaagtagatc |
36847209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 36840374 - 36840313
Alignment:
| Q |
79 |
aggataggaaggtttagaacttttctgtaagtgttgatgtcatgaagtagatccttctcctt |
140 |
Q |
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| T |
36840374 |
aggatagggaggttctgaacttttctgtaaatgttgatgtcatgaagtaaatcattctcctt |
36840313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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