View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15842_low_3 (Length: 448)

Name: NF15842_low_3
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15842_low_3
NF15842_low_3
[»] chr8 (3 HSPs)
chr8 (59-448)||(16690825-16691214)
chr8 (1-39)||(16691234-16691272)
chr8 (276-328)||(45371071-45371123)
[»] chr3 (2 HSPs)
chr3 (249-358)||(24830146-24830255)
chr3 (276-349)||(54838618-54838691)
[»] chr6 (5 HSPs)
chr6 (224-341)||(31694684-31694799)
chr6 (279-328)||(9075211-9075260)
chr6 (337-366)||(20868635-20868664)
chr6 (276-328)||(9074109-9074161)
chr6 (318-358)||(34227377-34227417)
[»] chr7 (2 HSPs)
chr7 (282-358)||(48517388-48517464)
chr7 (279-349)||(24673376-24673446)
[»] chr5 (3 HSPs)
chr5 (317-368)||(4345191-4345241)
chr5 (237-308)||(40990954-40991025)
chr5 (225-265)||(28781136-28781176)
[»] chr4 (1 HSPs)
chr4 (237-301)||(48244442-48244506)


Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 59 - 448
Target Start/End: Complemental strand, 16691214 - 16690825
Alignment:
Q  59 caaggatgttaaccaagtatccttccttgcatcgattaataaaagaaaagacaattaatcatttgatcagggatccttagtttcggttgatcactgaaca 158  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16691214 caaggatgttaaccaagtatccttccttgcatcgatttataaaagaaaagacaattaatcatttgatcagggatccttagtttcggttgatcactgaaca 16691115  T
Q  159 tgcttagcacaagatatgatttgttaggcaccagtgttgtcaatagcagctatgatgtgcaatagtgctatagcataatggaattttcacaaatcgctat 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16691114 tgcttagcacaagatatgatttgttaggcaccagtgttgtcaatagcagctatgatgtgcaatagtgctatagcataatggaattttcgcaaatcgctat 16691015  T
Q  259 tgttctgttacacaccgtttagtacaaaatgttttcaaatagagggtataacggcaccatagcactgttgcgaagcgaaatttgaacaaactgttatttt 358  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16691014 tgttctgttacacactgtttagtacaaaatgttttcaaatagagggtataacggcactatagcactgttgcgaagcgaaatttgaacaaactgttatttt 16690915  T
Q  359 ttgcgatctgtaatttgtaacacagttaggaactaaaacagtatagttgatgatttctgctctaatttattctaagtatgatttttgttt 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16690914 ttgcgatctgtaatttgtaacacagttaggaactaaaacagtatagttgatgatttctgctctaatttattctaagtatgatttttgttt 16690825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 16691272 - 16691234
Alignment:
Q  1 tcatgatttctgattttaattcatgaaaaagttcgtaaa 39  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  16691272 tcatgatttttgattttaattcatgaaaaagttcgtaaa 16691234  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 45371123 - 45371071
Alignment:
Q  276 tttagtacaaaatgttttcaaatagagggtataacggcaccatagcactgttg 328  Q
    |||||||||||||||| ||||||||    ||||||||||| ||||||||||||    
T  45371123 tttagtacaaaatgttgtcaaatagctactataacggcactatagcactgttg 45371071  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 358
Target Start/End: Original strand, 24830146 - 24830255
Alignment:
Q  249 aaatcgctattgttctgttacacaccgtttagtacaaaatgttttcaaatagagggtataacggcaccatagcactgttgcgaagcgaaatttgaacaaa 348  Q
    ||||||||||||||||   | ||||  ||||||| |||||||| ||||||| ||| |||| |||| | |||||||| ||| | ||| |||||||||||||    
T  24830146 aaatcgctattgttctacaatacactatttagtataaaatgttgtcaaataaaggctatatcggcgctatagcactcttgtgtagcaaaatttgaacaaa 24830245  T
Q  349 ctgttatttt 358  Q
    ||||| ||||    
T  24830246 ctgttgtttt 24830255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 349
Target Start/End: Original strand, 54838618 - 54838691
Alignment:
Q  276 tttagtacaaaatgttttcaaatagagggtataacggcaccatagcactgttgcgaagcgaaatttgaacaaac 349  Q
    |||||||||||||||| |||||||| || || || | | | |||||||||||||  |||| |||||||||||||    
T  54838618 tttagtacaaaatgttgtcaaatagtggctaaaatgccgctatagcactgttgcacagcggaatttgaacaaac 54838691  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 341
Target Start/End: Complemental strand, 31694799 - 31694684
Alignment:
Q  224 tgctatagcataatggaattttcacaaatcgctattgttctgttacacaccgtttagtacaaaatgttttcaaatagagggtataacggcaccatagcac 323  Q
    |||||| || || ||||||||  |||||  ||||||||||||| | ||||  ||||||||||||||||||||||||| ||| || ||||||  |||||||    
T  31694799 tgctatggcgtagtggaatttagacaaactgctattgttctgtgatacactatttagtacaaaatgttttcaaatagtgggcat-acggca-tatagcac 31694702  T
Q  324 tgttgcgaagcgaaattt 341  Q
    | ||||| |||| |||||    
T  31694701 tattgcgtagcggaattt 31694684  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 9075211 - 9075260
Alignment:
Q  279 agtacaaaatgttttcaaatagagggtataacggcaccatagcactgttg 328  Q
    ||||||||||||| ||||||||||| |||| |||| | ||||||||||||    
T  9075211 agtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttg 9075260  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 366
Target Start/End: Complemental strand, 20868664 - 20868635
Alignment:
Q  337 aatttgaacaaactgttattttttgcgatc 366  Q
    ||||||||||||||||||||||||||||||    
T  20868664 aatttgaacaaactgttattttttgcgatc 20868635  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 9074161 - 9074109
Alignment:
Q  276 tttagtacaaaatgttttcaaatagagggtataacggcaccatagcactgttg 328  Q
    |||| ||||||||||| ||||||||||| |||| |||| | ||||||||||||    
T  9074161 tttactacaaaatgttatcaaatagaggctatagcggcgctatagcactgttg 9074109  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 34227377 - 34227417
Alignment:
Q  318 tagcactgttgcgaagcgaaatttgaacaaactgttatttt 358  Q
    ||||||||||| | || ||||||||||||||||||||||||    
T  34227377 tagcactgttgtgtagtgaaatttgaacaaactgttatttt 34227417  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 48517464 - 48517388
Alignment:
Q  282 acaaaatgttttcaaatagagggtataacggcaccatagcactgttgcgaagcgaaatttgaacaaactgttatttt 358  Q
    ||||||||||||||||||| || |||| |||| | |||||| |||||   |||||||||||||||||| | ||||||    
T  48517464 acaaaatgttttcaaatagtggttatagcggcgctatagcaatgttgtatagcgaaatttgaacaaaccgctatttt 48517388  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 24673446 - 24673376
Alignment:
Q  279 agtacaaaatgttttcaaatagagggtataacggcaccatagcactgttgcgaagcgaaatttgaacaaac 349  Q
    ||||||||||||| ||||||||  | |||| |||||||||| |||||||||  |||  |||||||||||||    
T  24673446 agtacaaaatgttgtcaaatagccgctatagcggcaccatatcactgttgcatagctgaatttgaacaaac 24673376  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 4345191 - 4345241
Alignment:
Q  317 atagcactgttgcgaagcgaaatttgaacaaactgttattttttgcgatctg 368  Q
    |||||| |||||||||||| ||||||||||| |||||| |||||||||||||    
T  4345191 atagcattgttgcgaagcggaatttgaacaatctgtta-tttttgcgatctg 4345241  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 40990954 - 40991025
Alignment:
Q  237 tggaattttcacaaatcgctattgttctgttacacaccgtttagtacaaaatgttttcaaatagagggtata 308  Q
    ||||||||  ||||| ||||||| |||||| |||| |  |||||||||||||||| |||||||| |||||||    
T  40990954 tggaatttagacaaaccgctattcttctgtgacacgctatttagtacaaaatgttgtcaaatagtgggtata 40991025  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 28781176 - 28781136
Alignment:
Q  225 gctatagcataatggaattttcacaaatcgctattgttctg 265  Q
    ||||||||||| ||||||||| |||||||||| ||||||||    
T  28781176 gctatagcatagtggaattttaacaaatcgctgttgttctg 28781136  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 48244506 - 48244442
Alignment:
Q  237 tggaattttcacaaatcgctattgttctgttacacaccgtttagtacaaaatgttttcaaataga 301  Q
    ||||||||  |||||||||||||||||||  | |||| ||||||||||  ||||| |||||||||    
T  48244506 tggaatttaaacaaatcgctattgttctgcgatacactgtttagtacagtatgttgtcaaataga 48244442  T

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