View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15842_low_4 (Length: 412)
Name: NF15842_low_4
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15842_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 3485943 - 3485674
Alignment:
| Q |
5 |
aaatagatggtcataacaattgcatcctcccacaaaaagttgcacgttattcaaaagcacaccctacctaattaagttatttgttgtaggaataagattc |
104 |
Q |
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| T |
3485943 |
aaatagatggtcataacaactgcatccttccacaaaaagttgcacgttattcagaagcacaccctacctaattaagttatttgttgtaggaataagattc |
3485844 |
T |
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| Q |
105 |
caaagcagtcctcaagcaaaaaggtttatcttcaaaagaactactttgtgccaaataatgttagacatttaagaagtaatggtgtttttcatcttggaca |
204 |
Q |
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| T |
3485843 |
caaagcagtcctcaaacaaaaaggtttaccttcaaaagaactgctttgtgccaaataatgttagacatttaagaagtaatggtgtttttcatcttggaca |
3485744 |
T |
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| Q |
205 |
agtagttataaacaccactaacaataaaggtggtaattacttgtatggatttgaccttataaaatccaat |
274 |
Q |
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| T |
3485743 |
agtagttataaacaccactaacaataaaggtggtaattacttatatggatttgaccttataaaatccaat |
3485674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 259 - 392
Target Start/End: Complemental strand, 3485649 - 3485517
Alignment:
| Q |
259 |
ccttataaaatccaataataaagaatcttggtaaatgaatcaattcatatggttgatcattgatgaacttaaggttggatcgtccggtcaacaagtcaat |
358 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3485649 |
ccttataaaatccaataataaagaatcttggtaaaagaatcaattcatatggttgatcattgatgaacttaaggttggatcgtctggtcaacaagtcaat |
3485550 |
T |
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| Q |
359 |
gccaagtgatcaagaataccaagccaattgtatt |
392 |
Q |
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| T |
3485549 |
g-caagtcatgaagaataccaagccaattgtatt |
3485517 |
T |
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