View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15842_low_6 (Length: 375)
Name: NF15842_low_6
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15842_low_6 |
 | |
|
| [»] scaffold0581 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 25616320 - 25616672
Alignment:
| Q |
18 |
aagaggggtagaccaagaagaaatcctgctggtgtagaggaagaaaaggaagaagctgcaccaacaattgtggctaagacaaagatggtacaaagaaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25616320 |
aagaggggtagaccaagaagaaatcctgctggtgtagaggaagaaaaggaagaagctgcaccaacaattgtggctaagacaaagatggtacaaagaaaat |
25616419 |
T |
|
| Q |
118 |
atccctcgagagtatgcgttagnnnnnnnngggcagagactttagctacaattgtgacaaagaagggtataccaagaaaaaatcctgctcctctttctgt |
217 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25616420 |
atccctcgagagtatgtgttagaaaagaaaaggcagagacgttagctacaattgtgacaaagaagggtataccaagaaaaaatcctgctcctctttctgt |
25616519 |
T |
|
| Q |
218 |
tattttagtagactgatataacaaatatatgttatctgt--tatatatgctcagattgaaatagatactgaaattaattaagagtatgtttaagaacaat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25616520 |
tattttagtagactgatataacaaatatatgttatctgttatatatatgctcagattgaaatagatactgaaattaattaagagtatgtttaagaacaat |
25616619 |
T |
|
| Q |
316 |
ccatgtatcggagttaatcatcaggatttatgtagctgttatgattgatgatg |
368 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
25616620 |
ccatgtatcggagttagttatcaggatttatgtagctgttatgattgatgatg |
25616672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 257 - 365
Target Start/End: Original strand, 25611134 - 25611241
Alignment:
| Q |
257 |
tatatatgctcagattgaaatagatactgaaattaattaagagtatgtttaagaacaatccatgtatcggagttaatcatcaggatttatgtagctgtta |
356 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| |||||| |||| |||||||||| ||| ||||||| | || ||||||||||||||||||| |
|
|
| T |
25611134 |
tatatatgatcagattgaaatagatactgagattaattaa-agtatgcttaacaacaatccatatattggagttagttattaggatttatgtagctgtta |
25611232 |
T |
|
| Q |
357 |
tgattgatg |
365 |
Q |
| |
|
||||||||| |
|
|
| T |
25611233 |
tgattgatg |
25611241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 257 - 368
Target Start/End: Complemental strand, 6354 - 6243
Alignment:
| Q |
257 |
tatatatgctcagattgaaatagatactgaaattaattaagagtatgtttaagaacaatccatgtatcggagttaatcatcaggatttatgtagctgtta |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
6354 |
tatatatgctcagattgaaatagatactgaaattaattaagagtatgtttaagaacaatccatgtatcggagttaattatcaggatttatgcagctgtta |
6255 |
T |
|
| Q |
357 |
tgattgatgatg |
368 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6254 |
tgattgatgatg |
6243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University