View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15842_low_7 (Length: 361)
Name: NF15842_low_7
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15842_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 46629351 - 46629024
Alignment:
| Q |
15 |
cagagaggatgggatggcacagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46629351 |
cagagaggatgggatggcacagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtctt |
46629252 |
T |
|
| Q |
115 |
ggtccagtaaaaagtttcttcccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46629251 |
ggtccagtaaaaagtttcttcccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccat |
46629152 |
T |
|
| Q |
215 |
agtaaaatgaaagtatttcccccatccctttgttctcgatgaatctttttatcggagtaaaattcttcccaaaaataaacaaactaagtagaaaacattt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46629151 |
agtaaaatgaaagtatttcccccatccctttgttctcgatgaatctttttatcggagtaaaattcttcccaaaaataaacaaactaagtagaaaacattt |
46629052 |
T |
|
| Q |
315 |
tgtatcggcatcgctccatgtttctgac |
342 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
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|
| T |
46629051 |
tgtatcagcatcgctccatgtttctgac |
46629024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 298
Target Start/End: Original strand, 46643667 - 46643943
Alignment:
| Q |
22 |
gatgggatggcacagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccag |
121 |
Q |
| |
|
|||| |||| ||||||||||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||| || | ||| | |
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|
| T |
46643667 |
gatgagatgtcacagttgaatacctgtaaaaatgtatcttgagattcgtcagagacatgaggaatcaagcgagataatagttcttgttgcctcgctccgg |
46643766 |
T |
|
| Q |
122 |
taaaaagtttcttcccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaa |
221 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46643767 |
caaaaagtttcttccctattatacattttctcccttttaatttcctgcactccgaccatctacaatatccatcagtttcgtaaaactttccatagtaaaa |
46643866 |
T |
|
| Q |
222 |
tgaaagtatttcccccatccctttgttctcgatgaatctttttatcggagtaaaattcttcccaaaaataaacaaac |
298 |
Q |
| |
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|| ||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
46643867 |
tgtaagtatttcccccatccgtttgttctctatgaatctttttatcttagtaaagttcttcccaaaaataaacaaac |
46643943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 35 - 342
Target Start/End: Complemental strand, 46617959 - 46617652
Alignment:
| Q |
35 |
agttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttctt |
134 |
Q |
| |
|
|||||||||||||| ||| || || ||||||||||||||| |||||||||||||||||||| |||| ||||| ||| || ||||| | |||||| || | |
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|
| T |
46617959 |
agttgaatacctgtgacagagcattttgagattcttcagagacatgaggaatcaagcgagacaatagttcatgttgcctcggtccggcaaaaaggttatg |
46617860 |
T |
|
| Q |
135 |
cccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaatgaaagtatttcc |
234 |
Q |
| |
|
|| |||||||| |||||||| ||| |||| |||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46617859 |
tcctatcatacactttctcccttttttcttcctgcacttcgaccatctatgatatccatcagttttgtaaaaccttccatagtaaaatgaaagtatttcc |
46617760 |
T |
|
| Q |
235 |
cccatccctttgttctcgatgaatctttttatcggagtaaaattcttcccaaaaataaacaaactaagtagaaaacattttgtatcggcatcgctccatg |
334 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||| |||| ||| ||||| ||||||| |
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| T |
46617759 |
cccatccctttgttctcgatgaatcgttttatctgagtaaaattcttcccaaaaataaacaaacctagttcaaaactatttgcatcagcatcactccatg |
46617660 |
T |
|
| Q |
335 |
tttctgac |
342 |
Q |
| |
|
| |||||| |
|
|
| T |
46617659 |
tgtctgac |
46617652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 35 - 334
Target Start/End: Complemental strand, 46636657 - 46636358
Alignment:
| Q |
35 |
agttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttctt |
134 |
Q |
| |
|
|||||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||| |||| ||||| ||| || ||||| | |||||| || | |
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|
| T |
46636657 |
agttgaatacctgtgacagagcctcttgagattcttcagagacatgaggaatcaagcgagacaatagttcatgttgcctcggtccggcaaaaaggttatg |
46636558 |
T |
|
| Q |
135 |
cccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaatgaaagtatttcc |
234 |
Q |
| |
|
|| ||||||||||||||||| ||| |||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
46636557 |
tcctatcatacattttctcccttttttcttcctgcacttcgaccatctaagatatccatcagttttgtaaaactttccatagtaaaatgaaagcatttcc |
46636458 |
T |
|
| Q |
235 |
cccatccctttgttctcgatgaatctttttatcggagtaaaattcttcccaaaaataaacaaactaagtagaaaacattttgtatcggcatcgctccatg |
334 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||||||||||||| |||||||||||||| |||| ||||| |||||||| ||||| ||||||| |
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|
| T |
46636457 |
cccatccctttgttctcgataaattgttttatatgagtaaaattcttccgaaaaataaacaaacctagtacaaaactatttgtatcagcatcactccatg |
46636358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 310
Target Start/End: Original strand, 46177017 - 46177305
Alignment:
| Q |
22 |
gatgggatggcacagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccag |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||| || | ||| | ||| || ||||||| |
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|
| T |
46177017 |
gatgagatggcacagttgaatacctgtaacaaagtatcttgcgattcttcagagacatgagtaatcaagcgagacaaaagttcttgttgcctcggtccag |
46177116 |
T |
|
| Q |
122 |
taaaaagtttcttcccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaa |
221 |
Q |
| |
|
||||||||||| || |||||||||| | ||| ||| | || |||||| ||||||||||| |||||| |||||||||||||||| |||||||||||| |
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|
| T |
46177117 |
caaaaagtttctgtcctgtcatacatttccccccttttttcctcctgcacttcgaccatctacgatatccttcagttttgtaaaactctccatagtaaaa |
46177216 |
T |
|
| Q |
222 |
tgaaagtatttcccccatccctttgttctcgatgaatctttttatcggagtaaaattcttcccaaaaataaacaaactaagtagaaaac |
310 |
Q |
| |
|
||| ||||| ||||||||| ||||||||| | |||||||||||| || |||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
46177217 |
tgagagtatctcccccatcaatttgttctctaagaatctttttatttgaataaaattcttcccaaacataaacaaaccaagtagaaaac |
46177305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 33 - 320
Target Start/End: Original strand, 15770075 - 15770362
Alignment:
| Q |
33 |
acagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttc |
132 |
Q |
| |
|
|||||||||||||||| ||| || |||||| ||||||||||||||||||| |||||||||||| || | ||||| ||| || |||||| ||||||||||| |
|
|
| T |
15770075 |
acagttgaatacctgtgacagagtatcttgcgattcttcagatacatgagtaatcaagcgagacaaaagttcatgttgcctcggtccactaaaaagtttc |
15770174 |
T |
|
| Q |
133 |
ttcccaatcatacattttctcccctttaacttcatgcactccgaccatctacaatatccatcagttttgtaaaactttccatagtaaaatgaaagtattt |
232 |
Q |
| |
|
| || ||||||| ||| | ||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
15770175 |
tgtcctatcatacgtttcccccccttttttttcctgcactctgaccatctacgatatccatcagttttgtaaaactttccatagtaaaatgagagtattt |
15770274 |
T |
|
| Q |
233 |
cccccatccctttgttctcgatgaatctttttatcggagtaaaattcttcccaaaaataaacaaactaagtagaaaacattttgtatc |
320 |
Q |
| |
|
||||||||| |||||| || | ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
15770275 |
cccccatccgtttgttatctaagaatctttttatctgcataaaattcttcccaaaaataaacaaaccaagtagaaaactttttgtatc |
15770362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 18376224 - 18376257
Alignment:
| Q |
64 |
gattcttcagatacatgaggaatcaagcgagata |
97 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
18376224 |
gattcttcggatacatgaggaatcaagcgagata |
18376257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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