View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15842_low_9 (Length: 339)

Name: NF15842_low_9
Description: NF15842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15842_low_9
NF15842_low_9
[»] chr8 (24 HSPs)
chr8 (1-327)||(19186984-19187312)
chr8 (63-327)||(16006290-16006553)
chr8 (111-327)||(15963745-15963964)
chr8 (102-327)||(15954794-15955021)
chr8 (189-327)||(19149223-19149363)
chr8 (189-327)||(15982202-15982342)
chr8 (198-304)||(19263816-19263922)
chr8 (209-323)||(15943107-15943223)
chr8 (209-292)||(19454356-19454439)
chr8 (214-292)||(19348300-19348378)
chr8 (210-292)||(19551605-19551687)
chr8 (210-292)||(19581001-19581083)
chr8 (216-292)||(19170584-19170660)
chr8 (216-292)||(19289564-19289640)
chr8 (192-283)||(16049367-16049458)
chr8 (209-292)||(19526635-19526718)
chr8 (214-292)||(19379366-19379444)
chr8 (210-292)||(19407337-19407419)
chr8 (214-292)||(19500616-19500694)
chr8 (240-292)||(19274817-19274869)
chr8 (204-292)||(19357331-19357419)
chr8 (212-292)||(19415418-19415498)
chr8 (210-292)||(19537529-19537611)
chr8 (216-292)||(19399065-19399141)
[»] chr1 (1 HSPs)
chr1 (204-292)||(36311449-36311537)
[»] chr7 (2 HSPs)
chr7 (219-263)||(19938994-19939038)
chr7 (219-263)||(19970133-19970177)


Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 19186984 - 19187312
Alignment:
Q  1 ctaccaactctccattcatttcagcagtaaaaacagataaccgatattaagaatagtaatttgagaactaaatgttattaatatatacaagtaatattac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19186984 ctaccaactctccattcatttcagcagtaaaaacagataaccgatattaagaatagtaatttgagaactaaatgttattaatatatacaagtaatgttac 19187083  T
Q  101 ttattttgcctatctaacatatttgatggttgtttatatttattttaattcttcttctcatggcattgtatttctttctttttccgtgtgagaagactcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19187084 ttattttgcctatctaacatatttgatggttgtttatatttattttaatgcttcttctcatggcattgtatttctttctttttccgtgtgagaagactcc 19187183  T
Q  201 accagaagaaagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagacttcgaataa 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19187184 actagaagaaagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagacttcgaataa 19187283  T
Q  301 tc--cagagatttgaaggctagtaatatt 327  Q
    ||  |||||||||||||||||||||||||    
T  19187284 tccacagagatttgaaggctagtaatatt 19187312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 63 - 327
Target Start/End: Original strand, 16006290 - 16006553
Alignment:
Q  63 gagaactaaatgttattaatatatacaagtaatattacttattttgcctatctaacatatttgatggttgtttatatttattttaattcttcttctcatg 162  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  16006290 gagaactaaatgttattaatatatacaagtaatgttacctattttgtctatctaacatatttgatggttctttatatttattttaatacttcttctcatg 16006389  T
Q  163 gcattgtatttctttctttttccgtgtgagaagactccaccagaagaaagttgctagattggaataaacgctttagcataatagaaggaattgctcaagg 262  Q
    ||||||||||| ||||||||   ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  16006390 gcattgtatttttttctttt---gtgtgagaagattccaccagaagaaagttgctagattggaacaaacgttttagcataatagaaggaattgctcaagg 16006486  T
Q  263 actactataccttcacaaatactcaagacttcgaataatc--cagagatttgaaggctagtaatatt 327  Q
    | |||| ||||||||||||||||||||||| ||||| |||  |||||||||||||||||||||||||    
T  16006487 attactttaccttcacaaatactcaagactccgaattatccacagagatttgaaggctagtaatatt 16006553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 111 - 327
Target Start/End: Complemental strand, 15963964 - 15963745
Alignment:
Q  111 tatctaacatatttgatggttgttta-tatttattttaattcttcttctcatggcattgtatttctttctttttccgtgtgagaagactccaccagaaga 209  Q
    |||||||||||||| ||||||||||| |||||||| |||| | |||||||||| |||| |||||||||||||||  ||||||||||| ||||  ||||||    
T  15963964 tatctaacatattttatggttgtttaatatttattataatacatcttctcatgacattatatttctttctttttgtgtgtgagaagattccaatagaaga 15963865  T
Q  210 aagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagacttcgaataatc--cagag 307  Q
    ||  || |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||    
T  15963864 aaaatgttagattggaacaaacgctttagcataatcgaaggaattgctcaaggactactataccttcacaaatactcaagacttcgaattatccacagag 15963765  T
Q  308 atttgaaggctagtaatatt 327  Q
    ||||||||||||||||||||    
T  15963764 atttgaaggctagtaatatt 15963745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 102 - 327
Target Start/End: Original strand, 15954794 - 15955021
Alignment:
Q  102 tattttgcctatctaacatatttgatggttgttta-tatttattttaattcttcttctcatggcattgtatttctttctttttccgtgtgagaagactcc 200  Q
    ||||||| || |||||||||||| ||||||||||| |||||| | |||| |  |||| |||| |||| |||||||||||||||  ||||||||||| |||    
T  15954794 tattttgtctttctaacatattt-atggttgtttactatttaatataatacaccttcacatgacattatatttctttctttttgtgtgtgagaagattcc 15954892  T
Q  201 accagaagaaagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagacttcgaataa 300  Q
    || |||||||||||| |||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||| |    
T  15954893 actagaagaaagttgttagattggaacaaacgctttaccataatagaaggaattgcccaaggactactataccttcacaaatactcaagactctgaatta 15954992  T
Q  301 tcca--gagatttgaaggctagtaatatt 327  Q
    ||||  |||||||||||||||||||||||    
T  15954993 tccaccgagatttgaaggctagtaatatt 15955021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 189 - 327
Target Start/End: Complemental strand, 19149363 - 19149223
Alignment:
Q  189 tgagaagactccaccagaagaaagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaa 288  Q
    |||||||||||||| ||||||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  19149363 tgagaagactccactagaagaaagttgctaaactggaacaaacgctttaacataatagaaggaattgctcaaggattactatatcttcacaaatactcaa 19149264  T
Q  289 gacttcgaataat--ccagagatttgaaggctagtaatatt 327  Q
    ||||  |||| ||   |||||||||||||||||||||||||    
T  19149263 gactcagaattattcacagagatttgaaggctagtaatatt 19149223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 189 - 327
Target Start/End: Complemental strand, 15982342 - 15982202
Alignment:
Q  189 tgagaagactccaccagaagaaagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaa 288  Q
    |||||||||||||| ||||||||||||||| | |||||||||||||||| |||||| || ||||||||||||||  || |||| ||||||||||||||||    
T  15982342 tgagaagactccactagaagaaagttgctaaactggaataaacgctttaacataatggatggaattgctcaagggttattatatcttcacaaatactcaa 15982243  T
Q  289 gacttcgaataat--ccagagatttgaaggctagtaatatt 327  Q
    |||    ||| ||   |||||||||||||||||||||||||    
T  15982242 gacacaaaattattcacagagatttgaaggctagtaatatt 15982202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 198 - 304
Target Start/End: Original strand, 19263816 - 19263922
Alignment:
Q  198 tccaccagaagaaagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagacttcgaa 297  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | || | || |||||||| ||||| ||||| ||||    
T  19263816 tccactagaagaaagttgctagattggaataaccgctttagcataatagaaggaattgctcaagtagtattgtatcttcacaattactcgagactccgaa 19263915  T
Q  298 taatcca 304  Q
    | |||||    
T  19263916 ttatcca 19263922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 209 - 323
Target Start/End: Original strand, 15943107 - 15943223
Alignment:
Q  209 aaagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagacttcgaataatcc--aga 306  Q
    |||| |||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||| |||||||| |||||||||||  |||| || |  |||    
T  15943107 aaagctgctagattggaataagcgctttagcataatcgaaggaatcgctcaaggattactatatcttcacaagtactcaagactcagaattatacataga 15943206  T
Q  307 gatttgaaggctagtaa 323  Q
    ||||||||| |||||||    
T  15943207 gatttgaagcctagtaa 15943223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 19454356 - 19454439
Alignment:
Q  209 aaagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    |||||||||||||||||| || || || | |||||||||||||||| |||||||| |||| || |||||||| |||||||||||    
T  19454356 aaagttgctagattggaaaaagcgtttcaacataatagaaggaatttctcaaggattactctatcttcacaagtactcaagact 19454439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 19348300 - 19348378
Alignment:
Q  214 tgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    ||||||||||||| || || |||| ||||||||||||||||||||||||| | || || ||||| || |||||||||||    
T  19348300 tgctagattggaagaagcgttttaacataatagaaggaattgctcaaggattgctctatcttcataagtactcaagact 19348378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 19551687 - 19551605
Alignment:
Q  210 aagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    ||||| ||||||||||| || || || | |||||||||||||||| |||||||| |||| || |||||||| |||||||||||    
T  19551687 aagttcctagattggaaaaagcgtttcaacataatagaaggaatttctcaaggattactctatcttcacaagtactcaagact 19551605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 19581001 - 19581083
Alignment:
Q  210 aagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    ||||| ||||||||||| || || || | |||||||||||||||| |||||||| |||| || |||||||| |||||||||||    
T  19581001 aagttcctagattggaaaaagcgtttcaacataatagaaggaatttctcaaggattactctatcttcacaagtactcaagact 19581083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 19170660 - 19170584
Alignment:
Q  216 ctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    ||||||||||| || ||||| | |||||||||||||||  |||||||| |||| || |||||||| |||||||||||    
T  19170660 ctagattggaagaagcgcttgaacataatagaaggaatatctcaaggattactctatcttcacaagtactcaagact 19170584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 19289564 - 19289640
Alignment:
Q  216 ctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    ||||||||||| || ||||| | |||||||||||||||  |||||||| |||| || |||||||| |||||||||||    
T  19289564 ctagattggaagaagcgcttgaacataatagaaggaatatctcaaggattactctatcttcacaagtactcaagact 19289640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 283
Target Start/End: Complemental strand, 16049458 - 16049367
Alignment:
Q  192 gaagactccaccagaagaaagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaata 283  Q
    ||||| ||||| | |||||||||  |||||||||| ||||  | ||||||||||||||||||| || ||||  ||||||| |||||||||||    
T  16049458 gaagattccactataagaaagttcgtagattggaacaaacattgtagcataatagaaggaatttcttaaggtttactatatcttcacaaata 16049367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 19526718 - 19526635
Alignment:
Q  209 aaagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    |||||| ||||||||||| || || || | |||||||||||||||| |||||||| |||| || ||||| || |||||||||||    
T  19526718 aaagtttctagattggaaaaagcgtttcaacataatagaaggaatttctcaaggattactctatcttcataagtactcaagact 19526635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 19379366 - 19379444
Alignment:
Q  214 tgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    ||||||||||||| || || || | ||||||||||||||||||||||||| | || || ||||| || |||||||||||    
T  19379366 tgctagattggaagaagcgtttcaacataatagaaggaattgctcaaggattgctctatcttcataagtactcaagact 19379444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 19407337 - 19407419
Alignment:
Q  210 aagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    ||||||||||||||||| || || || | | |||||||||||||| |||||||| |||| || |||||||| ||||| |||||    
T  19407337 aagttgctagattggaaaaagcgtttcaacgtaatagaaggaatttctcaaggattactctatcttcacaagtactctagact 19407419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 19500694 - 19500616
Alignment:
Q  214 tgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    ||||||||||||| || || || | ||||||||||||||||||||||||| | || || ||||| || |||||||||||    
T  19500694 tgctagattggaagaagcgtttcaacataatagaaggaattgctcaaggattgctctatcttcataagtactcaagact 19500616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 19274869 - 19274817
Alignment:
Q  240 ataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    ||||||||||||||| ||||||||||||| || ||||| || |||||||||||    
T  19274869 ataatagaaggaatttctcaaggactactctatcttcagaagtactcaagact 19274817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 19357331 - 19357419
Alignment:
Q  204 agaagaaagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    |||| |||||| ||||| ||||| || ||| | | |||||| ||||||||| ||||||||||||| || ||||| || |||||||||||    
T  19357331 agaaaaaagttactagactggaagaagcgcctgaacataatcgaaggaatttctcaaggactactctatcttcataagtactcaagact 19357419  T

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Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 19415418 - 19415498
Alignment:
Q  212 gttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    ||||||||||||||| || || || | |||||| ||||||||| |||||||| |||| || ||||| || |||||||||||    
T  19415418 gttgctagattggaagaagcgtttcaacataatcgaaggaatttctcaaggattactctatcttcataagtactcaagact 19415498  T

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Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 19537611 - 19537529
Alignment:
Q  210 aagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    ||||| ||| ||||||| | ||| || | |||||||||||||||| |||||||| |||| || ||||| || |||||||||||    
T  19537611 aagtttctaaattggaaaacacgtttcaacataatagaaggaatttctcaaggattactctatcttcataagtactcaagact 19537529  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 19399065 - 19399141
Alignment:
Q  216 ctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    ||||||||||| || || || | |||||||||||||||| |||||||| || | || ||||| || |||||||||||    
T  19399065 ctagattggaagaagcgtttcaacataatagaaggaatttctcaaggattattctatcttcataagtactcaagact 19399141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 292
Target Start/End: Complemental strand, 36311537 - 36311449
Alignment:
Q  204 agaagaaagttgctagattggaataaacgctttagcataatagaaggaattgctcaaggactactataccttcacaaatactcaagact 292  Q
    ||||| ||||| ||||| ||| | || ||||| | |||||| ||||||||| |||||||| |||| || |||||||| |||||||||||    
T  36311537 agaaggaagttactagactggtagaagcgcttcaacataattgaaggaatttctcaaggattactctatcttcacaagtactcaagact 36311449  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 19938994 - 19939038
Alignment:
Q  219 gattggaataaacgctttagcataatagaaggaattgctcaagga 263  Q
    |||||||  |||||||||||||||||||||||||| |||| ||||    
T  19938994 gattggaggaaacgctttagcataatagaaggaatagctcgagga 19939038  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 19970133 - 19970177
Alignment:
Q  219 gattggaataaacgctttagcataatagaaggaattgctcaagga 263  Q
    |||||||  |||||||||||||||||||||||||| |||| ||||    
T  19970133 gattggaggaaacgctttagcataatagaaggaatagctcgagga 19970177  T

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