View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15843_low_1 (Length: 462)
Name: NF15843_low_1
Description: NF15843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15843_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 76 - 448
Target Start/End: Complemental strand, 42014603 - 42014231
Alignment:
| Q |
76 |
aacttttactacctccttcttcatatgattcttcctagctttaacagcagcataaagcaacctaggcaaccgatcaaactcagcagcttcaatcctagga |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014603 |
aacttttactacctccttcttcatatgattcttcctagctttaacagcagcataaagcaacctaggcaaccgatcaaactcagcagcttcaatcctagga |
42014504 |
T |
|
| Q |
176 |
ggccaaaacctgggattcttataacaaagaaacacgtgtcgttcgtacaactgaacagtaccaacaagagaactttgtcgaaaatcaggtcttgagaatc |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014503 |
ggccaaaacctgggattcttataacaaagaaacacgtgtcgttcgtacaactcaacagtaccaacaagagaactttgtcgaaaatcaggtcttgagaatc |
42014404 |
T |
|
| Q |
276 |
caaactcaacatcagtaacatcaccagatgaaagaacaccatcgttctggaaacttccagaagcgcttcttggatcggtgaggtaactatcgagtgtgtc |
375 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42014403 |
caaactcaacatcggcaacatcaccagatgaaagaacaccatcgttctggaaacttccagaagcgcttcttgggtcggtgaggtaactatcgagtgtgtc |
42014304 |
T |
|
| Q |
376 |
agagacggtgattggtgaggaatgagaggaagatgatggcattgtgaatgttaagggttcttctctgtctctg |
448 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||| |
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| T |
42014303 |
agagacggtgatcggtgaggaatgagaggaagatgatgggattgtgaatgttaaagattcttctctttctctg |
42014231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 76 - 448
Target Start/End: Complemental strand, 1247831 - 1247459
Alignment:
| Q |
76 |
aacttttactacctccttcttcatatgattcttcctagctttaacagcagcataaagcaacctaggcaaccgatcaaactcagcagcttcaatcctagga |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1247831 |
aacttttactacctccttcttcatatgattcttcctagctttaacagcagcataaagcaacctaggcaaccgatcaaactcagcagcttcaatcctagga |
1247732 |
T |
|
| Q |
176 |
ggccaaaacctgggattcttataacaaagaaacacgtgtcgttcgtacaactgaacagtaccaacaagagaactttgtcgaaaatcaggtcttgagaatc |
275 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1247731 |
ggccaaaatctgggattcttataacatagaaacacgtgtcgttcgtacaactcaacagtaccaacaagagaactttgccgaaaatcaggtcttgagaatc |
1247632 |
T |
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| Q |
276 |
caaactcaacatcagtaacatcaccagatgaaagaacaccatcgttctggaaacttccagaagcgcttcttggatcggtgaggtaactatcgagtgtgtc |
375 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
1247631 |
caaactcaacatcagcaacatcaccagatgaaagaacaccatcgttctggaaacttccagaagcgcttcttgggtcagtgaggtaactatcgagtgtgtc |
1247532 |
T |
|
| Q |
376 |
agagacggtgattggtgaggaatgagaggaagatgatggcattgtgaatgttaagggttcttctctgtctctg |
448 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
1247531 |
agagacggtgattggtgaggaatgagaggaagatgatgggattgtgaatgttaagggttcttctctttctctg |
1247459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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