View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15843_low_3 (Length: 403)
Name: NF15843_low_3
Description: NF15843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15843_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 38769419 - 38769801
Alignment:
| Q |
18 |
atttggatattatctttcttttcccttacta------atatgttgtctttttataattagattctcacctcaaacaaatagtaacaaattactaacaatt |
111 |
Q |
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| T |
38769419 |
atttggatattctctttcttttcccttactataatatatatgttctctttttataattagattctcacctcaaacaaatagtaacaaattactaacaatt |
38769518 |
T |
|
| Q |
112 |
aagcatgctactatataaaaagaaagatatatgtttatatgctcacaaatttgttggccattgtaacaggtggatatagacgagctatacaaaagcttga |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38769519 |
aagcatgctactatataaaaagaaagatatatgtttatatgctcacaaatttgttggccattgtaacaggtggatatagacgagctatacaaaagtttga |
38769618 |
T |
|
| Q |
212 |
ccggagataaacctaaattttgaggttaccaccttctagactcggatatgtctatttaatagtcctttgcaatagtttgttgtgtgatgtacctaaagtt |
311 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38769619 |
ccggagataaacctaaattttgaggttactaccttctagactcggatatgtctatttaatagtcctttgcaatagtttgttgtgtgatgtacctaaagtt |
38769718 |
T |
|
| Q |
312 |
gctaaagtgttgtacttaatgttgaaagtgtacacgagaacaatctatttcgtttgaagaaaacaagtgtttgaatttgatga |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38769719 |
gctaaagtgttgtacttaatgttgaaagtgtacacgagaacaatctatttcgtttgaagaaaacaagtgtttgaatttgatga |
38769801 |
T |
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