View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15843_low_4 (Length: 395)

Name: NF15843_low_4
Description: NF15843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15843_low_4
NF15843_low_4
[»] chr1 (11 HSPs)
chr1 (19-395)||(6521636-6522012)
chr1 (19-215)||(6506903-6507099)
chr1 (19-395)||(6512624-6513000)
chr1 (285-395)||(6517023-6517133)
chr1 (19-198)||(6517220-6517399)
chr1 (303-379)||(6506733-6506809)
chr1 (106-223)||(47778041-47778158)
chr1 (126-223)||(47788183-47788280)
chr1 (19-191)||(47760133-47760299)
chr1 (126-219)||(47781969-47782062)
chr1 (114-191)||(6523733-6523810)
[»] scaffold0341 (4 HSPs)
scaffold0341 (19-215)||(928-1124)
scaffold0341 (19-215)||(8581-8778)
scaffold0341 (303-379)||(758-834)
scaffold0341 (303-379)||(8411-8487)
[»] chr7 (1 HSPs)
chr7 (22-167)||(722161-722305)
[»] chr5 (3 HSPs)
chr5 (20-140)||(28856512-28856632)
chr5 (88-138)||(28831318-28831368)
chr5 (20-140)||(28861789-28861909)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 6521636 - 6522012
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521636 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 6521735  T
Q  119 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6521736 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 6521835  T
Q  219 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaannnnnnnnnggatagtttaagaaataaagctgcatcaggggac 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||    
T  6521836 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaatttttttttggatagtttaagaaatagagctgcatcaggggac 6521935  T
Q  319 agtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggtctagctcaatg 395  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||    
T  6521936 agtgaccttaaatatgctgtaggaagtgatgaggttggtccaagtaataaccaaaccatatatggtcttgttcaatg 6522012  T

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Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 6507099 - 6506903
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  6507099 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 6507000  T
Q  119 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 215  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  6506999 aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 6506903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 6513000 - 6512624
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| | || |||||| ||||  |||||||||||| |||||    
T  6513000 gacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaattcatctgtctttctaacacaactttgtc 6512901  T
Q  119 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 218  Q
    |||| |||||||| || ||||| |||||  | || ||   |||||||||||| |||||| ||||||||||||| ||||| || |||| | |||||  |||    
T  6512900 aaaatcgaaaagaggctattggttggtatgatgaagatacatgcatgttgcgttactcataccgttcaatattcggtctgaatgaaactagaccttttta 6512801  T
Q  219 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaannnnnnnnnggatagtttaagaaataaagctgcatcaggggac 318  Q
    ||| |  |||| |   ||||| || |||||||| | ||| ||| | |||||  ||||         ||||| ||||||||||| |||| ||||||| ||     
T  6512800 tttaggatggagtttgaacaatgctacaaatgaagatgaatttgataaagtactgaaaaatttattggataatttaagaaatagagcttcatcaggtgat 6512701  T
Q  319 agtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggtctagctcaatg 395  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||| | ||||||    
T  6512700 agtgaccttaaatatgctgttggaagtgatgaggttggtcaaaataataatcaaactatatatgctcttgttcaatg 6512624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 285 - 395
Target Start/End: Complemental strand, 6517133 - 6517023
Alignment:
Q  285 ggatagtttaagaaataaagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggt 384  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6517133 ggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggt 6517034  T
Q  385 ctagctcaatg 395  Q
    |||||||||||    
T  6517033 ctagctcaatg 6517023  T

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Target: chr1; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 6517399 - 6517220
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||  |||||||||| |||||| ||| |||||||||||||  |||||||||||| |||||    
T  6517399 gacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtctccaaaattcaactgtgtttctaacacaacgttgtc 6517300  T
Q  119 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctc 198  Q
    ||||  ||||| |||||||||| |||||| | |||||   |||||||||||| ||||||| |||||||||||||||||||    
T  6517299 aaaatagaaaacaagcaattggttggtacgatgatgatagatgcatgttgcgttactcaagccgttcaatatttggtctc 6517220  T

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Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 303 - 379
Target Start/End: Complemental strand, 6506809 - 6506733
Alignment:
Q  303 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatat 379  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  6506809 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatat 6506733  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 47778041 - 47778158
Alignment:
Q  106 acacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaa 205  Q
    ||||||| ||||| ||||  ||| ||||||||||| |||||| | |||||| ||||||||||||| |||||| |||||||||||||| | ||||| ||||    
T  47778041 acacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaa 47778140  T
Q  206 ttggacctgcttattttg 223  Q
    |||||||||| |||||||    
T  47778141 ttggacctgcatattttg 47778158  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 47788183 - 47788280
Alignment:
Q  126 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttg 223  Q
    |||||||||||||||||||||| | |||||  |||| ||||| || || ||| ||||||||||| | ||||| |||||||||||||||||||||||||    
T  47788183 aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgcttattttg 47788280  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 47760299 - 47760133
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    |||||||||||||| |||||||| |||||||||||||| |||| | | | ||| |  | ||| |||||  ||||||  |||||||| ||| ||| |||||    
T  47760299 gacaaagtaaacgccattggactctgtagaggagatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtc 47760200  T
Q  119 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 191  Q
     ||||| ||||||||||||||| ||||      ||||  | ||||||||||| ||||||||||| ||||||||    
T  47760199 caaaccaaaaagaagcaattggttggt------atgataactgcatgttgcgttactcaaaccgatcaatatt 47760133  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 47781969 - 47782062
Alignment:
Q  126 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttat 219  Q
    |||||||||||||||||||||| | |||||  |||||||||| || || ||| ||||||| ||||| || || ||||||||||| || ||||||    
T  47781969 aaaagaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatattaggcctaaacgaaattgggccagcttat 47782062  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 6523733 - 6523810
Alignment:
Q  114 ttgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 191  Q
    ||||| ||||| ||||||||||||||| |||||  | |||||| ||||||||||||| || ||| ||||||| |||||    
T  6523733 ttgtccaaaccaaaaagaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttccatatt 6523810  T

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Target: scaffold0341 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 1124 - 928
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  1124 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 1025  T
Q  119 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 215  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  1024 aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 8778 - 8581
Alignment:
Q  19 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 118  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  8778 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 8679  T
Q  119 aaaa-ccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 215  Q
    ||||  |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  8678 aaaatacgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 8581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 303 - 379
Target Start/End: Complemental strand, 834 - 758
Alignment:
Q  303 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatat 379  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  834 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatat 758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 303 - 379
Target Start/End: Complemental strand, 8487 - 8411
Alignment:
Q  303 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatat 379  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  8487 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatat 8411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 722161 - 722305
Alignment:
Q  22 aaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaa 121  Q
    |||||||||| | |||||||||||||||||||||| || |||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||||   |||    
T  722161 aaagtaaacgtggttggactatgtagaggagatgttaagctcaatgattgtcaaa-ttgccacaaatattcaattgtccttctaacacaacatttataaa 722259  T
Q  122 accgaaaagaagcaattggatggtacaacgatgaagaatgcatgtt 167  Q
    ||||||||||||||||||||| |||| | |||||| ||||||||||    
T  722260 accgaaaagaagcaattggattgtacgatgatgaaaaatgcatgtt 722305  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 28856632 - 28856512
Alignment:
Q  20 acaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtca 119  Q
    |||||||| |||| || ||| |||| ||||||||||| || |  |||||||| |  | ||| || || |||||||  ||||||||||||||| ||||||     
T  28856632 acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtcc 28856533  T
Q  120 aaaccgaaaagaagcaattgg 140  Q
    ||||  |||||||||||||||    
T  28856532 aaacaaaaaagaagcaattgg 28856512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 28831368 - 28831318
Alignment:
Q  88 aattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaatt 138  Q
    |||||||  ||||||||||||||| |||||| ||||| |||||||||||||    
T  28831368 aattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaatt 28831318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 28861909 - 28861789
Alignment:
Q  20 acaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtca 119  Q
    |||||||| |||| || ||| |||| ||||||||||| || |  |||||||| |  | ||| || || |||||||  ||||||||||||||| | ||||     
T  28861909 acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcc 28861810  T
Q  120 aaaccgaaaagaagcaattgg 140  Q
     |||| |||||||||||||||    
T  28861809 taaccaaaaagaagcaattgg 28861789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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