View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15844_high_1 (Length: 412)
Name: NF15844_high_1
Description: NF15844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15844_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 70 - 390
Target Start/End: Complemental strand, 3214063 - 3213737
Alignment:
| Q |
70 |
tttacaaaccttatattttctactcctaattttaatcttcacctctctcacaaatttgctttgtgccttttcttttcattctaccaacatcgatcatcac |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3214063 |
tttacaaaccttatattttctactcctaattttaatattcacctctctcacaaatttgctttgtgctttttcttttcattctaccaacatcgatcatcac |
3213964 |
T |
|
| Q |
170 |
atacatgctcacgaaaacatcgactttgatttgtattgttttctactattgctctcttatctctagatcttctcccttttgttattttcattaatg--nn |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3213963 |
atacatgctcacgaaaacatcgactttgatttgtattgttttctaccattgctctcttatctctagatcttctcccttttgttattttcattaatgtttt |
3213864 |
T |
|
| Q |
268 |
nnnnnnncctctgtacttgttttctaccatcacttctacttccctcattcattccaatttatctctaggtag----ctttattttctactcatacacata |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3213863 |
tttttttcctctgtacttgttttctaccatcacttctacttccctcattcattccaatttatctctaggtagctaactttattttctactcatacacata |
3213764 |
T |
|
| Q |
364 |
acaggaggaggtgaggttcgaactccg |
390 |
Q |
| |
|
| |||||||||| |||||| ||||||| |
|
|
| T |
3213763 |
agaggaggaggtaaggttccaactccg |
3213737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 3214220 - 3214150
Alignment:
| Q |
1 |
aaatggctctttctagttacacccttaaaacatctagttacacccaaaatttctatgaaaattgctgtttt |
71 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3214220 |
aaatggctatttctagttacacccttaaaacatctagttacacccaaaatttctatgaaaattgttgtttt |
3214150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 11065631 - 11065701
Alignment:
| Q |
70 |
tttacaaaccttatattttctactcctaattttaatcttcacctctctcacaaatttgctttgtgccttttct |
142 |
Q |
| |
|
|||||||||| | |||||| | |||||||| ||| ||||||||||||||| |||||| |||| |||||||||| |
|
|
| T |
11065631 |
tttacaaaccctgtattttattctcctaatattactcttcacctctctca-aaattt-ctttatgccttttct |
11065701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 29945004 - 29945064
Alignment:
| Q |
100 |
tttaatcttcacctctctcacaaatttgctttgtgccttttcttttcattctaccaacatc |
160 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
29945004 |
tttaatcttcacctctttcacaaatttgcttggtgctttttcttttcattctaccaacatc |
29945064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Original strand, 29945111 - 29945144
Alignment:
| Q |
287 |
ttttctaccatcacttctacttccctcattcatt |
320 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
29945111 |
ttttctaccataacttctacttccctcattcatt |
29945144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 29609214 - 29609277
Alignment:
| Q |
185 |
aacatcgactttgatttgtattgttttctactattgctctcttatctctagatcttctcccttt |
248 |
Q |
| |
|
||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29609214 |
aacattgactttgagttgtattattttctaccattgctctcttatctctagatcttctcccttt |
29609277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 30901765 - 30901807
Alignment:
| Q |
10 |
tttctagttacacccttaaaacatctagttacacccaaaattt |
52 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
30901765 |
tttctagttacacccttaaaatatctggttacacccaaaattt |
30901807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University