View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15844_low_5 (Length: 283)
Name: NF15844_low_5
Description: NF15844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15844_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 7035886 - 7035622
Alignment:
| Q |
1 |
tgggaaagatttgtattttgttcgtatgcagactgatattattcataattttttattctacgtaggtgttttatatatctcctgaagtgttggagaaact |
100 |
Q |
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| T |
7035886 |
tgggaaagatctgtattttgtccgtatgcagactgatattattcataattttttattccacgtaggtgttttatatatctcccgaagtgttggagaaact |
7035787 |
T |
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| Q |
101 |
gaagcagcaacagaaggttaatcttctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattg |
200 |
Q |
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| T |
7035786 |
gaagcagcaacagaaggttaatcttctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattg |
7035687 |
T |
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| Q |
201 |
gattcttaaccgaaagaggctgtttgtttgaaggctatttcattctacctttgttgaggggaaaattct |
269 |
Q |
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| T |
7035686 |
gattcttaaccgaaagaggctg----tttgaaggctatttcattctacctttgttgaggggaaaattct |
7035622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 7897126 - 7896866
Alignment:
| Q |
1 |
tgggaaagatttgtattttgttcgtatgcagactgatattattcataattttttattctacgtaggtgttttatatatctcctgaagtgttggagaaact |
100 |
Q |
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| T |
7897126 |
tgggaaagatgtgtattttgcccgtatgcacactgatgttattcataattttttattctacgtaggtttttg---tatctcccgaagtgttggagacact |
7897030 |
T |
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| Q |
101 |
gaagcagcaacagaaggttaatcttctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattg |
200 |
Q |
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| T |
7897029 |
gaagcagcaacaaaaggttaatattctcccttgtctaaaaa-tgtgtgtatctcaattatgtgggttagctatcaattgcaattgaatttcttactattg |
7896931 |
T |
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| Q |
201 |
gattcttaaccgaaagaggctgtttgtttgaaggctatttcattctacctttgttgaggggaaaattct |
269 |
Q |
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| T |
7896930 |
gattcttaaccgaaagaggctg----tttgaaggctatttcattctacctttgttgaggggaaaattct |
7896866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 269
Target Start/End: Complemental strand, 7039336 - 7039179
Alignment:
| Q |
114 |
aaggttaatcttctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttagctatc----aattgcaa-ttgaatttctt-actattggattctt |
207 |
Q |
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| T |
7039336 |
aaggtttatcctctcccttgtcctaaaaatat-tgtatctcaagtatgtgggctagctatctatcaattgcaagttgaatttatttactatcggattctt |
7039238 |
T |
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| Q |
208 |
aaccgaa-agaggctgtttgtttgaaggctatttcattctacctttgttgaggggaaaattct |
269 |
Q |
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| T |
7039237 |
aaccgaacagaggctgtttat----aggctatttcatactacccttgttgaggggaaaattct |
7039179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 29380169 - 29380087
Alignment:
| Q |
183 |
ttgaatttcttactattggattcttaaccgaa-agaggctgtttgtttgaaggctatttcattctacctttgttgaggggaaaattct |
269 |
Q |
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| T |
29380169 |
ttgaatttcttactattggatt-ttaacccaacagaggctgttta----aaggctatttcatactacccttgttgaagggaaaattct |
29380087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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