View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15844_low_6 (Length: 251)

Name: NF15844_low_6
Description: NF15844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15844_low_6
NF15844_low_6
[»] chr1 (9 HSPs)
chr1 (15-233)||(50017560-50017784)
chr1 (52-132)||(11471311-11471391)
chr1 (53-132)||(11318763-11318842)
chr1 (53-132)||(11476784-11476863)
chr1 (78-134)||(17431701-17431757)
chr1 (53-134)||(28244189-28244272)
chr1 (52-132)||(17430758-17430839)
chr1 (53-125)||(50027519-50027592)
chr1 (83-131)||(35534507-35534555)
[»] chr5 (7 HSPs)
chr5 (52-233)||(25484162-25484344)
chr5 (54-134)||(25379439-25379519)
chr5 (52-132)||(25384065-25384145)
chr5 (83-131)||(10292976-10293024)
chr5 (78-133)||(25482733-25482788)
chr5 (53-126)||(23231600-23231674)
chr5 (81-131)||(38010630-38010680)
[»] chr6 (6 HSPs)
chr6 (53-132)||(10126551-10126630)
chr6 (53-134)||(10122322-10122403)
chr6 (53-133)||(19310336-19310416)
chr6 (53-133)||(19305841-19305921)
chr6 (83-119)||(34245592-34245628)
chr6 (79-119)||(35006191-35006231)
[»] chr2 (4 HSPs)
chr2 (53-132)||(38255469-38255548)
chr2 (52-131)||(43154091-43154170)
chr2 (52-131)||(43159350-43159429)
chr2 (52-132)||(38250094-38250174)
[»] chr7 (3 HSPs)
chr7 (53-133)||(22489242-22489322)
chr7 (78-134)||(22492406-22492462)
chr7 (53-133)||(48944282-48944362)
[»] chr4 (5 HSPs)
chr4 (79-133)||(54362247-54362301)
chr4 (53-133)||(28167591-28167672)
chr4 (83-133)||(28166932-28166982)
chr4 (78-124)||(48792834-48792880)
chr4 (78-127)||(48796046-48796095)
[»] scaffold0464 (1 HSPs)
scaffold0464 (83-117)||(6449-6483)
[»] chr3 (2 HSPs)
chr3 (79-133)||(33862375-33862429)
chr3 (81-131)||(47186280-47186330)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 50017560 - 50017784
Alignment:
Q  15 aatatggttacagaaactccaaaatccttgataatacggggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| | | |||    
T  50017560 aatatggttacagaaactccaaaatccttgataatacggggttccgcttgtgtaacatagtggattttatgttatataacattgtccaataaggatatgc 50017659  T
Q  115 cacgtggcacacccttttt----atnnnnnnntcaattaaagctgatggaaataaacacat--gagagtagaaactgagaaaaagcaacgcgctcctctt 208  Q
    |||||||||||||||||||    |        |||||||||||||||||||| |||||| |  |||||||||||||||||||| ||||| |||| |||||    
T  50017660 cacgtggcacaccctttttttaaaaaaaaaaatcaattaaagctgatggaaagaaacacgtgagagagtagaaactgagaaaacgcaacacgcttctctt 50017759  T
Q  209 ctccttctcctctacgacatgaact 233  Q
    |||||||||||||||||||||||||    
T  50017760 ctccttctcctctacgacatgaact 50017784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 11471311 - 11471391
Alignment:
Q  52 ggggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 132  Q
    |||| |||||| ||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  11471311 ggggctccacttgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 11471391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 11318842 - 11318763
Alignment:
Q  53 gggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 132  Q
    |||||||||| ||||||| | | | |||||| |||||||||||||||||||| | |||||||||| ||||||||||||||    
T  11318842 gggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccctttt 11318763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 11476863 - 11476784
Alignment:
Q  53 gggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 132  Q
    |||||||||| ||||||| | | | |||||| |||||||||||||||||||| | |||||||||| ||||||||||||||    
T  11476863 gggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccctttt 11476784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 17431757 - 17431701
Alignment:
Q  78 attttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttta 134  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||    
T  17431757 attttatgttatataacattgtccaatcagggtgtgccatgtggcacacctttttta 17431701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 28244189 - 28244272
Alignment:
Q  53 gggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacg--tggcacacccttttta 134  Q
    |||||||||| ||||||| | | | |||||| |||||||||||||||||||| | |||||||||||  ||||||||||||||||    
T  28244189 gggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtatggcacacccttttta 28244272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 17430758 - 17430839
Alignment:
Q  52 ggggttccactcgtgtaacgtagtgg-attttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 132  Q
    ||||||||||| ||||||| | | || |||||||||||||||| |||||||||| | | |||||||||||||||||| ||||    
T  17430758 ggggttccacttgtgtaacattggggcattttatgttatataatattgtccaatcaggatgtgccacgtggcacaccatttt 17430839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 50027592 - 50027519
Alignment:
Q  53 gggttccactcgtgtaacgta-gtggattttatgttatataacattgtccaataaaggtgtgccacgtggcaca 125  Q
    |||||||||| ||||||| || ||| |||||||||||| ||| |||| ||||| ||||||||||||||||||||    
T  50027592 gggttccacttgtgtaacataagtgaattttatgttatgtaatattgcccaatcaaggtgtgccacgtggcaca 50027519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 35534555 - 35534507
Alignment:
Q  83 atgttatataacattgtccaataaaggtgtgccacgtggcacacccttt 131  Q
    ||||||||||| |||| ||||| |||||||| || ||||||||||||||    
T  35534555 atgttatataatattggccaattaaggtgtgtcatgtggcacacccttt 35534507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 52 - 233
Target Start/End: Complemental strand, 25484344 - 25484162
Alignment:
Q  52 ggggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcaca-ccctttttatnnnnnnntcaattaa 150  Q
    ||||||||||| ||||||| |||||||||||  |||||||||||||||||||||| |||||||||||||||||| || ||||| |       ||| ||||    
T  25484344 ggggttccacttgtgtaacatagtggatttt--gttatataacattgtccaataagggtgtgccacgtggcacatccttttttttaaaaatttcagttaa 25484247  T
Q  151 agctgatggaaataaacacat--gagagtagaaactgagaaaaagcaacgcgctcctcttctccttctcctctacgacatgaact 233  Q
    || ||||||||| |||||| |  ||||||||||| |||||||| |||||| |||||||||||| |||||||||||||||||||||    
T  25484246 agttgatggaaagaaacacgtgagagagtagaaattgagaaaacgcaacgtgctcctcttctcgttctcctctacgacatgaact 25484162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 25379439 - 25379519
Alignment:
Q  54 ggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttta 134  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  25379439 ggttccacttgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacatggcacacccttttta 25379519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 25384145 - 25384065
Alignment:
Q  52 ggggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 132  Q
    ||||||||||| ||||||| | | | |||||| |||||||||||| ||||||| | |||||||||||||||||||||||||    
T  25384145 ggggttccacttgtgtaacattgggtattttaagttatataacatggtccaatcagggtgtgccacgtggcacaccctttt 25384065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 10293024 - 10292976
Alignment:
Q  83 atgttatataacattgtccaataaaggtgtgccacgtggcacacccttt 131  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  10293024 atgttatataacattggccaattaaggtgtgccacgtggcacacccttt 10292976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 25482733 - 25482788
Alignment:
Q  78 attttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 133  Q
    |||||| |||||||||||||| ||||| | | |||||||| |||||||||||||||    
T  25482733 attttaagttatataacattgcccaattaggatgtgccacatggcacacccttttt 25482788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 23231674 - 23231600
Alignment:
Q  53 gggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacg-tggcacac 126  Q
    |||||||||| ||||||| | |   ||||||||||| ||||||||||||||| ||||||| ||||| ||||||||    
T  23231674 gggttccacttgtgtaacattggccattttatgttacataacattgtccaatcaaggtgtaccacgatggcacac 23231600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 38010630 - 38010680
Alignment:
Q  81 ttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttt 131  Q
    |||||||||||||||||  ||||| ||||||||||| ||||||||| ||||    
T  38010630 ttatgttatataacattagccaattaaggtgtgccatgtggcacacacttt 38010680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 10126630 - 10126551
Alignment:
Q  53 gggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 132  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10126630 gggttccacttgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacgtggcacaccctttt 10126551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 10122322 - 10122403
Alignment:
Q  53 gggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttta 134  Q
    |||||||||| ||||||| | | | ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  10122322 gggttccacttgtgtaacattgggtattttatgttatataacattgtccaatcagggtgtgccacgtggcacacccttttta 10122403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 19310416 - 19310336
Alignment:
Q  53 gggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 133  Q
    ||||| |||| ||||||| |||| |||||||||||||||||||||||||||||| | |||||||||||||||||| |||||    
T  19310416 gggtttcacttgtgtaacatagtcgattttatgttatataacattgtccaataaggatgtgccacgtggcacacctttttt 19310336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 19305841 - 19305921
Alignment:
Q  53 gggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 133  Q
    |||||||||| ||||||| | | | |||||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  19305841 gggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttttt 19305921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 34245592 - 34245628
Alignment:
Q  83 atgttatataacattgtccaataaaggtgtgccacgt 119  Q
    |||||||||||||||| |||||||| |||||||||||    
T  34245592 atgttatataacattgaccaataaaagtgtgccacgt 34245628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 35006191 - 35006231
Alignment:
Q  79 ttttatgttatataacattgtccaataaaggtgtgccacgt 119  Q
    ||||||||||||||||||||| |||| |||| |||||||||    
T  35006191 ttttatgttatataacattgttcaatcaaggcgtgccacgt 35006231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 38255548 - 38255469
Alignment:
Q  53 gggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 132  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  38255548 gggttccacttgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 38255469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 43154091 - 43154170
Alignment:
Q  52 ggggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttt 131  Q
    |||| |||||| ||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||    
T  43154091 ggggctccacttgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttt 43154170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 43159429 - 43159350
Alignment:
Q  52 ggggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttt 131  Q
    ||||||||||| ||||||| | | | |||||| |||||||||||||||||||| | ||||||||||||||||||||||||    
T  43159429 ggggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttt 43159350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 38250094 - 38250174
Alignment:
Q  52 ggggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 132  Q
    ||||||||||| ||||||| | | | |||||| |||||||||||||||||||| | |||||||||| ||||||||||||||    
T  38250094 ggggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccctttt 38250174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 22489242 - 22489322
Alignment:
Q  53 gggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 133  Q
    |||||||||| ||||||| | | | |||||| ||||||||||||||| |||| | ||||||||| | ||||||||||||||    
T  22489242 gggttccacttgtgtaacattgggtattttaagttatataacattgttcaatcagggtgtgccatgcggcacacccttttt 22489322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 22492462 - 22492406
Alignment:
Q  78 attttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttta 134  Q
    |||||| |||||||||||||| ||||| | | |||||||||||||||||||||||||    
T  22492462 attttaagttatataacattgcccaatcaggatgtgccacgtggcacacccttttta 22492406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 48944282 - 48944362
Alignment:
Q  53 gggttccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 133  Q
    |||||||||| ||||||| | |   |||||||||||||||||||||| || | | |||||||||||||||||||| |||||    
T  48944282 gggttccacttgtgtaacattggacattttatgttatataacattgttcagtcagggtgtgccacgtggcacacctttttt 48944362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 54362247 - 54362301
Alignment:
Q  79 ttttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 133  Q
    |||||||||||||||||||| | ||| | |||||||||| |||||||||||||||    
T  54362247 ttttatgttatataacattgcctaatcagggtgtgccacatggcacacccttttt 54362301  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 28167672 - 28167591
Alignment:
Q  53 gggttccactcgtgtaacgtagtggatttta-tgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 133  Q
    |||||||||| ||||||| | | || ||||| ||||||||||||||| | ||| | |||||||||||| |||||||||||||    
T  28167672 gggttccacttgtgtaacattgggggttttaatgttatataacattggcgaatcagggtgtgccacgtcgcacacccttttt 28167591  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 28166932 - 28166982
Alignment:
Q  83 atgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 133  Q
    |||||||||||||||| | ||| | |||||||||||||||||||| |||||    
T  28166932 atgttatataacattggcgaatcagggtgtgccacgtggcacacctttttt 28166982  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 48792834 - 48792880
Alignment:
Q  78 attttatgttatataacattgtccaataaaggtgtgccacgtggcac 124  Q
    |||||||| |||||||||||| ||||| | |||||||||||||||||    
T  48792834 attttatggtatataacattgcccaatcagggtgtgccacgtggcac 48792880  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 48796095 - 48796046
Alignment:
Q  78 attttatgttatataacattgtccaataaaggtgtgccacgtggcacacc 127  Q
    |||| ||| |||||||||||| ||||| | ||||||||||||||||||||    
T  48796095 atttcatggtatataacattgcccaatcagggtgtgccacgtggcacacc 48796046  T

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Target: scaffold0464 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 6449 - 6483
Alignment:
Q  83 atgttatataacattgtccaataaaggtgtgccac 117  Q
    |||||||||||||||| ||||||||||||||||||    
T  6449 atgttatataacattggccaataaaggtgtgccac 6483  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 33862375 - 33862429
Alignment:
Q  79 ttttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 133  Q
    ||||||||||||||||| || ||| | | |||||||||| |||||||||||||||    
T  33862375 ttttatgttatataacactgcccattcagggtgtgccacatggcacacccttttt 33862429  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 47186330 - 47186280
Alignment:
Q  81 ttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttt 131  Q
    |||||||||||||||||  ||||| ||||||||||| ||||||||| ||||    
T  47186330 ttatgttatataacattagccaattaaggtgtgccatgtggcacacacttt 47186280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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