View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15845_high_2 (Length: 639)
Name: NF15845_high_2
Description: NF15845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15845_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 28 - 624
Target Start/End: Complemental strand, 3706529 - 3705933
Alignment:
| Q |
28 |
caaatcaaattttcccatcacacacttcgcatttacctttactcaaatcagcacaagcaaatccaaatgcacaaaagcatatcaggttcatcattgggac |
127 |
Q |
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| T |
3706529 |
caaatcaaattttcccatcacacacttcacatttacctttactcaaatcagcacaagcaaatcaaaatgcacaaaagcatatcaggttcatcattgggac |
3706430 |
T |
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| Q |
128 |
caggtggtttggacctaactcaatccttcttcaagtccatccaacatgcctcacctccttctccaaccaaacgccacaacaagatctcagttatcggcgc |
227 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3706429 |
cagatggtttggacctaactcaatccttcttcaagtccatccaacatgcctcacctccttctccaaccaaacgccacaacaagatctcagttatcggcgc |
3706330 |
T |
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| Q |
228 |
aggcaacgtgggaatggctatagctcaaaccatcctaacacaagacctagtcgacgagcttgttcttgttgacaccattcctgacaaactacgaggtgag |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3706329 |
aggcaacgtgggaatggctatagctcaaaccatcctaacacaagacctagtcgacgagcttgttcttgttgacgccattcctgacaaactacgaggtgag |
3706230 |
T |
|
| Q |
328 |
atgctagatctacaacatgctgcggccttcctcccccgtactaagatccaggcctccactgactattcagtgacgatggggtctgacctctgcatcgtca |
427 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
3706229 |
atgctggatctacaacatgctgcggccttcctcccccgcactaagatccaggcctccactgactattcagtgacgatgggttccgacctctgcatcgtca |
3706130 |
T |
|
| Q |
428 |
ctgctggggctcgccagattaatggcgagtccagattgaatttgctacaaaggaatgtagctttgtttnnnnnnnttataccgcctttggttcgttactc |
527 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3706129 |
ctgctggggctcgtcagattaatggcgagtccagattgaatttgctacaaaggaatgtagctttgtttaaaaaaattataccgcctttggttcgttactc |
3706030 |
T |
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| Q |
528 |
tcctcattgtgttcttctaattgtttccaatcctgttgatgtgctcacttacattgcttggaaactttctggtttcccctccaaccgcgtcattggt |
624 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3706029 |
tcctcattgtgttcttctaattgtttccaatcctgttgatgtgctcacttacattgcttggaaactttctggtttcccctccaaccgcgtcattggt |
3705933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 365
Target Start/End: Original strand, 41765147 - 41765310
Alignment:
| Q |
202 |
cacaacaagatctcagttatcggcgcaggcaacgtgggaatggctatagctcaaaccatcctaacacaagacctagtcgacgagcttgttcttgttgaca |
301 |
Q |
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|||||||||||||| || |||||||| |||||||| || ||||| || ||||| ||||||||||| |||||||| |||||||| || | || |||| |
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| T |
41765147 |
cacaacaagatctccgtcatcggcgccggcaacgtcggcatggccattgctcagaccatcctaactcaagacctcacagacgagctcgtcatcgtcgaca |
41765246 |
T |
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| Q |
302 |
ccattcctgacaaactacgaggtgagatgctagatctacaacatgctgcggccttcctcccccg |
365 |
Q |
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|| || |||||||| || || || ||||| ||||| ||||| ||||| || ||||||||||| |
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| T |
41765247 |
acaaacccgacaaactccgcggcgaaatgcttgatcttcaacacgctgctgctttcctcccccg |
41765310 |
T |
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