View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15845_high_4 (Length: 499)
Name: NF15845_high_4
Description: NF15845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15845_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 489
Target Start/End: Complemental strand, 13230180 - 13229709
Alignment:
| Q |
17 |
caatggcacctctcgtcttacaagtcatttttataagaacaattaatccaatacaaaaccctaatnnnnnnnnttttaaaactcttagactcttatgtgt |
116 |
Q |
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| T |
13230180 |
caatggcacctcttgtcttacaagtcatttttataagaacaattaatccaatacaaaaccctaataaaatatattttaaaactcttagactcttatgtgt |
13230081 |
T |
|
| Q |
117 |
gatgtggctatatatatgcccttatacttctctacaaaaactcataacattctactgaagggatcaagaaggagaaattgaaggaaaaatgtatagctct |
216 |
Q |
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|||||||||||||||||| ||||||||||||||| || ||||| || |||||| |||||| |||||| |||||||||||||| |||||||||||||||| |
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| T |
13230080 |
gatgtggctatatatatgaccttatacttctcta-aaggactcacaatattctattgaaggaatcaagtaggagaaattgaagtaaaaatgtatagctct |
13229982 |
T |
|
| Q |
217 |
tacatttttgtgattctatctttgttcattcttgtgtctaaagaaaatacagtgcttgtacatggtgatgatcctactgatggttttacctctgtgccat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13229981 |
tacatttttgtgattctatctttgttcattcttgtgtctatagaaaatacagtgcttgtacatggtgatgatcctactgatggttttacctctgtgccat |
13229882 |
T |
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| Q |
317 |
tgactgaagcaaattttgaggtgcagaaaccatacaatataccaattgagaaaaggtatagcttcattgatggtgttcatcgattttgggtttatgctca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13229881 |
tgactgaagcaaattttgaggtgcagaaaccatacaatataccaattgagaaaaggtatagcttcattgatggtgttcatcgattttgggtttatgctca |
13229782 |
T |
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| Q |
417 |
tgacaagccttattctcctgatagccctactcaaccacgcaccgaaattcggataaaggtaattttccctttg |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13229781 |
tgacaagccttattctcctgatagccctactcaaccacgcaccgaaattcggataaaggtaattttccctttg |
13229709 |
T |
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