View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15845_high_6 (Length: 430)
Name: NF15845_high_6
Description: NF15845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15845_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 10551058 - 10550630
Alignment:
| Q |
1 |
ctagaatcgttggaaggaaagactttggtggaaggcctaaaa-ccaaaagaacaaagcgtggttggaagnnnnnnnnnttcaataaacatttactattag |
99 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||| |||||||||| |||| |||| | ||| ||||||||||||||| |||||| |
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| T |
10551058 |
ctagaatcgttggaaggaaagactatggtagaaggcctaaaaaccaaaagaacgaagcatggtcgaaagaaaaataa-ttcaataaacatttattattag |
10550960 |
T |
|
| Q |
100 |
tggaatctttaacatgtgtcatttgaaaacatattagtgtacccctttaataaattattgtgtctaggaatattcactgcataatgaattgattcatacc |
199 |
Q |
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||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
10550959 |
tggaatctttaacatgtgtcatttggacacatattaatatacccctttaataaattattgtgtctaggattattcactgcataatgaaatgattcatacc |
10550860 |
T |
|
| Q |
200 |
ctttataaa--------------taggagatttatcacatggcattattaagcaaataaaacattttttaatgtaatttagtagtcgcactttaattata |
285 |
Q |
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| T |
10550859 |
ctttataaaacttggtttataaataggagatttatcacatggcattattaagcaaataaaacattttttaatgtaatttagtagtcgcactttaattata |
10550760 |
T |
|
| Q |
286 |
ctatatctacaacaaacaaaatgatattggatttcatacaagatccttacattgttagcgtatgtcttttctattacctcctccgttttaaaatacatgt |
385 |
Q |
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|||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||| || | ||||||||||||||||||| |
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| T |
10550759 |
ctatatctacaacagacaaaattatattagatttcatacaagatccttacattgttagtgtacgtcttttctatcactccttccgttttaaaatacatgt |
10550660 |
T |
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| Q |
386 |
tgtagtcaactattgtacatatgtcaatat |
415 |
Q |
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| T |
10550659 |
tgtagtcaaccattgtacatatgtcaatat |
10550630 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 324173 - 324123
Alignment:
| Q |
364 |
tcctccgttttaaaatacatgttgtagtcaactattgtacatatgtcaata |
414 |
Q |
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|||||| ||||||||||||||||||||||||| | | || ||||||||||| |
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| T |
324173 |
tcctccattttaaaatacatgttgtagtcaaccactttatatatgtcaata |
324123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 55344122 - 55344162
Alignment:
| Q |
81 |
aataaacatttactattagtggaatctttaacatgtgtcat |
121 |
Q |
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|||||| |||||||||| ||||||||||||| ||||||||| |
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| T |
55344122 |
aataaatatttactatttgtggaatctttaaaatgtgtcat |
55344162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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