View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15845_high_9 (Length: 320)
Name: NF15845_high_9
Description: NF15845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15845_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 30768461 - 30768770
Alignment:
| Q |
1 |
gatcttttttaccggtggctcgaactatgtgtcctccttctacttgaactatctctcctccagtactcctcatccctagttctcaccttctctatgcttt |
100 |
Q |
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| T |
30768461 |
gatcttttttaccggtggctcgaactatgtgtcctccttctacttgaactatctctcctccagtactcctcatccctagttcccaccttctctatgcttt |
30768560 |
T |
|
| Q |
101 |
ctatggaaagttgtttctatttggtggggttggttttgggcttattgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaacc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768561 |
ctatgaaaagttgtttctatttggtggggttggttttgggcttattgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaacc |
30768660 |
T |
|
| Q |
201 |
ggaaagtgcttataaagagagtcactcctcaccctacaaccggttttgtaacgatgagttttaaaactaataaagtttaagtgttgttgttatgattcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768661 |
ggaaagtgcttataaagagagtcactcctcaccctacaaccggttttgtaacgatgagttttaaaactaataaagtttaagtgttgttgttatgattcat |
30768760 |
T |
|
| Q |
301 |
gtgccctttg |
310 |
Q |
| |
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|||||||||| |
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| T |
30768761 |
gtgccctttg |
30768770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 44573371 - 44573423
Alignment:
| Q |
210 |
ttataaagag-agtcactcctcaccctacaa-ccggttttgtaacgatgagtt |
260 |
Q |
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|||||||||| || ||||||||||||||||| |||||||||||| |||||||| |
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| T |
44573371 |
ttataaagaggaggcactcctcaccctacaagccggttttgtaaggatgagtt |
44573423 |
T |
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