View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15845_low_1 (Length: 674)
Name: NF15845_low_1
Description: NF15845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15845_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 11 - 658
Target Start/End: Original strand, 1686886 - 1687533
Alignment:
| Q |
11 |
gaagcaaaggaaaagttatgttagaaagagtgctaagacttctgagtgtcaacgaccattatttgttgatgatggaaattccatctctttaccatttttg |
110 |
Q |
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| T |
1686886 |
gaagcagaggaaaagttatgttagaaagagtgctaagacttgtgagtgtcaacgaccattatttgttgatgatggaaattccatctctttaccatttttg |
1686985 |
T |
|
| Q |
111 |
gaaaatttcaacaatacaaagattgagaagagtggatttgagagttcaaccataactaatgtatatgctatcgaatacaattcactacaaagttaccaaa |
210 |
Q |
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| T |
1686986 |
ttaaatttcaacaatacaaagattgagaagagtggatttgagagttcaaccataactaatgtatctgctatcgaatacaattcactacaaagttaccaaa |
1687085 |
T |
|
| Q |
211 |
aaatgacttcattgtcatctttatgtcttgttgagaatagaagaattggaggaaattttccaataatgtgtaagaggaaaagagtaaaaagagaaagaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1687086 |
aaatgacttcattgtcatctttatgtcttgttgagaatagaagaattggaggaaattttccaataatgtgtaagaggaaaagagtaaaaagagaaagaat |
1687185 |
T |
|
| Q |
311 |
aaatttggtaaaactcttgaacccttttgcaaagggtagtagatcaaaaacttttattaggaagaggaaatgttggaaagatttctacgtagaaggaaat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1687186 |
aaatttggtaaaactcttgaacccttttgcaaagggtagtagatcaaaaacttttattaggaagaggaaatgttggaaagatttctacgtagaaggaaat |
1687285 |
T |
|
| Q |
411 |
tctactacaatcagccgaaaaatgaaaactataatcaagaagattatttcctcgaatnnnnnnntacatcgaaaggaaaataagagaaatgtccgtaaaa |
510 |
Q |
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| T |
1687286 |
tctactacaatcagccgaaaaatgaaaactataatcaagaagattatttcctcaaataaaaaaatacatcgaaaggcaaataagagaaatgtccgtaaaa |
1687385 |
T |
|
| Q |
511 |
aatcaggagaattagttctttatgaacggccattgttgaaagtcgacgtaaagtttgacgaagagacattacgtgtatggaacttgctcgttgctgaaaa |
610 |
Q |
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| T |
1687386 |
aatcaggagaattagttctttatgaacggccattgttgaaagtcaatgtaaagtttgacgaagagacattacgtgtatggaacttgctcgttgctgaaaa |
1687485 |
T |
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| Q |
611 |
caaacatgatgagaaagatgaacataagaggaggtattgggaggagat |
658 |
Q |
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| T |
1687486 |
caaacatgatgagaaagatgaacataagaggaggtattgggaggagat |
1687533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 653
Target Start/End: Original strand, 41918017 - 41918649
Alignment:
| Q |
18 |
aggaaaagttatgttagaaagagtgctaagacttctgagtgtcaacgaccattatttgttgatgatggaaattccatctctttaccatttttggaaaatt |
117 |
Q |
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|||||||||||||||||||||| ||| |||| | ||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||| ||| |
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| T |
41918017 |
aggaaaagttatgttagaaagactgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttggaatatt |
41918116 |
T |
|
| Q |
118 |
tcaacaatacaaagattgagaagagtggatttgagagttcaaccataactaatgtatatgctatcgaatacaattcactacaaagttaccaaaaaatgac |
217 |
Q |
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|||| || ||||| || | || |||||||||| | |||||| |||||||||| || || |||| ||||||||| |||||||||| || |||||| | |
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| T |
41918117 |
tcaaagattcaaaggtttatcagggtggatttgaaaattcaactataactaatgaatctggcatcgtatacaattcggtacaaagttatcagaaaatgtc |
41918216 |
T |
|
| Q |
218 |
ttcattgtcatctttatgtcttgttgagaatagaagaattggaggaaattttccaataatgtgtaagaggaaaagagtaaaaagagaaagaataaatttg |
317 |
Q |
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|||||||||| ||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||| |||| |
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| T |
41918217 |
ttcattgtcaggtttatgtctagttgagagtaggagaattggacaaaattttccaataatgtgtaaaaggaaaagagttagaagagaaagaataagtttg |
41918316 |
T |
|
| Q |
318 |
gtaaaactcttgaacccttttgcaaagggtagtagatcaaaaacttttattaggaagaggaaatgttggaaagatttctacgtagaaggaaattctacta |
417 |
Q |
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|||||||||||| ||| ||||||||||| |||||||||| |||| ||| |||||| |||||||||| | | || | | ||||||||||| ||| |
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| T |
41918317 |
gtaaaactcttgcccccgtttgcaaagggccagagatcaaaaagttttgttacgaagagaaaatgttggacacaattttgggcagaaggaaatt---cta |
41918413 |
T |
|
| Q |
418 |
caatcagccgaaaaatgaaaactataatcaagaagattatttcctcgaatnnnnnnntacatcgaaaggaaaataagagaaatgtccgtaaaaaatcagg |
517 |
Q |
| |
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||| |||||||||||||| | || |||||||||| |||||||||| ||| | ||||||||| ||||||||||| ||||||| ||||| ||||| |
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| T |
41918414 |
caaccagccgaaaaatgagatctttaatcaagaaaattatttccttgaagaaaaaaatgcatcgaaagaaaaataagagagatgtccgcaaaaagtcagg |
41918513 |
T |
|
| Q |
518 |
agaattagttctttatgaacggccattgttgaaagtcgacgtaaagtttgacgaagagacattacgtgtatggaacttgctcgttgctgaaaacaaacat |
617 |
Q |
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||||||||||||||| | || |||| |||| || |||| | ||||||||||||||||||| |||||||| || ||||||| ||||||||||||| |
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| T |
41918514 |
ggaattagttctttataatcgaccatcagcagaagttgaagtaatgcttgacgaagagacattacgagtatggaatttactcgttgttgaaaacaaacat |
41918613 |
T |
|
| Q |
618 |
gatgagaaagatgaacataagaggaggtattgggag |
653 |
Q |
| |
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|| ||||| ||||||||||||||||||||||||||| |
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| T |
41918614 |
gaagagaatgatgaacataagaggaggtattgggag |
41918649 |
T |
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