View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15845_low_12 (Length: 298)
Name: NF15845_low_12
Description: NF15845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15845_low_12 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 43564813 - 43564532
Alignment:
| Q |
18 |
actcaatgggttggtaaatctggttctgatttacaaatggaaactcaatggattctttttgatattcctgaaatcaaatcctatgctgtgatcattccta |
117 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
43564813 |
actcaatgggtaggaaaatctggttctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattccta |
43564714 |
T |
|
| Q |
118 |
taattgaaaaaggttttaggtctgcactttttccaggttctgatgatcatgtcatgatttgtgctgaaagtggttcaacaaaggtgaaagaatcatgttt |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||| |||||| |||||| |||| |
|
|
| T |
43564713 |
taattgaaaaaggttttaggtcagcactttttcctggttctaatgaccatgttatgatttgtgctgaaagtggttcaaccaaggtggtagaatctagttt |
43564614 |
T |
|
| Q |
218 |
caatgctattgcttatgttca-ttttctgaaaatccttatgatttgatgaaagaggcttatagtgttataagggttcatctc |
298 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43564613 |
caatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgttataagggttcatctc |
43564532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 36432770 - 36432487
Alignment:
| Q |
16 |
ctactcaatgggttggtaaatctggttctgatttacaaatggaaactcaatggattctttttgatattcctgaaatcaaatcctatgctgtgatcattcc |
115 |
Q |
| |
|
||||||||||| | || | ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36432770 |
ctactcaatggataggaagatctggttctgatttgcaaatggaaactcaatggattctttttgagattcctgaaatcagatcctatgctgtgatcattcc |
36432671 |
T |
|
| Q |
116 |
tataattgaaaaaggttttaggtctgcactttttccaggttctgatgatcatgtcatgatttgtgctgaaagtggttcaacaaaggtgaaagaatcatgt |
215 |
Q |
| |
|
||| |||||||| |||||||||||||||||| ||| ||||||||||| ||| | |||||||||||||| |||||||||||||||||||||| || || |
|
|
| T |
36432670 |
tatcattgaaaacggttttaggtctgcacttcatcctggttctgatgaccattttatgatttgtgctgagagtggttcaacaaaggtgaaagcattgagt |
36432571 |
T |
|
| Q |
216 |
ttcaatgctattgcttatgttca-ttttctgaaaatccttatgatttgatgaaagaggcttatagtgttataagggttcatctc |
298 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | | |||||||||||| |
|
|
| T |
36432570 |
ttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgctttgagggttcatctc |
36432487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 36 - 298
Target Start/End: Original strand, 43973807 - 43974070
Alignment:
| Q |
36 |
tctggttctgatttacaaatggaaactcaatggattctttttgatattcctgaaatcaaatcctatgctgtgatcattcctataattgaaaaaggtttta |
135 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| | ||||||||| |||||| |
|
|
| T |
43973807 |
tctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattcctgtcattgaaaaaagtttta |
43973906 |
T |
|
| Q |
136 |
ggtctgcactttttccaggttctgatgatcatgtcatgatttgtgctgaaagtggttcaacaaaggtgaaagaatcatgtttcaatgctattgcttatgt |
235 |
Q |
| |
|
||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||| |||||| | ||||||| ||| ||||| |||| ||||||||||| |
|
|
| T |
43973907 |
ggtctgcgcttcatcctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcatcgagtttcgatgcgattgcttatgt |
43974006 |
T |
|
| Q |
236 |
tcat-tttctgaaaatccttatgatttgatgaaagaggcttatagtgttataagggttcatctc |
298 |
Q |
| |
|
|||| | ||||||||||||| ||||||||| || |||||||||| ||| |||||||||||| |
|
|
| T |
43974007 |
tcatgtgagtgaaaatccttatactttgatgaatgaagcttatagtgctattagggttcatctc |
43974070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 8952365 - 8952456
Alignment:
| Q |
36 |
tctggttctgatttacaaatggaaactcaatggattctttttgatattcctgaaatcaaatcctatgctgtgatcattcctataattgaaaa |
127 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| | |||||| |
|
|
| T |
8952365 |
tctggatctgatttacaaatggaaaatcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattcctatcaatgaaaa |
8952456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 8952460 - 8952492
Alignment:
| Q |
165 |
catgtcatgatttgtgctgaaagtggttcaaca |
197 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
8952460 |
catgtcatgatttgtgctgaaagtagttcaaca |
8952492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University