View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15845_low_13 (Length: 297)
Name: NF15845_low_13
Description: NF15845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15845_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 22805229 - 22805019
Alignment:
| Q |
17 |
aaagattaatgttactttagctccaattgatgttgttaaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaatagaatg |
116 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||||||||| |||||| ||||||| ||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
22805229 |
aaagattgatgttactttagctccagtttatgttgttaaaccaacaggaccttcgttatcaatgaccaaagatctttctccaattcttaacaatagtatg |
22805130 |
T |
|
| Q |
117 |
tatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22805129 |
tatgttggattctcatcttcaacagggttacttgcagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaaccttgtaatct |
22805030 |
T |
|
| Q |
217 |
ctgaacttcct |
227 |
Q |
| |
|
|| || ||||| |
|
|
| T |
22805029 |
ctcaatttcct |
22805019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 53 - 287
Target Start/End: Complemental strand, 22814902 - 22814668
Alignment:
| Q |
53 |
taaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaatagaatgtatgttggattctcatcttcaacagggttacttgca |
152 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22814902 |
taaaccaacacaacctttgttatcattgaccaaagatctttcttcaattctcaacaatagaatgtatgttggattctcatcttcaacagggttacttgta |
22814803 |
T |
|
| Q |
153 |
gcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctgagctaacaatatttgatgagnnnn |
252 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||| |||| |
|
|
| T |
22814802 |
gcttctcattatattcttgggtggagttttaaggttaatggccaagctcaaaaccttgaaatatctgaacttcctaagctaacagtatttgctgaggtaa |
22814703 |
T |
|
| Q |
253 |
nnnngtcaaaatttttaactgttgggttgcctttg |
287 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |
|
|
| T |
22814702 |
aaaagtctaaatttttaactgttgggttgcctttg |
22814668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 22875836 - 22875623
Alignment:
| Q |
17 |
aaagattaatgttactttagctccaattgatgtt-gt--taaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaataga |
113 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| | || ||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
22875836 |
aaagattgatgttactttagctccaatagatgctagtaataaaccaacacaacctttgttatcattgaccaaagatctttctccaattctcaacaataga |
22875737 |
T |
|
| Q |
114 |
atgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22875736 |
atgtatgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaa |
22875637 |
T |
|
| Q |
214 |
tctctgaacttcct |
227 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22875636 |
tctctgaacttcct |
22875623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 53 - 243
Target Start/End: Complemental strand, 22885500 - 22885310
Alignment:
| Q |
53 |
taaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaatagaatgtatgttggattctcatcttcaacagggttacttgca |
152 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
22885500 |
taaaccaacacaacctttgttatcattgaccaaagatctttctccaatactcaacaatagaatgtatgttggattctcatcttcaacagggttaattgta |
22885401 |
T |
|
| Q |
153 |
gcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctgagctaacaatatttg |
243 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
22885400 |
gcttctcattatattcttggttggagttttaaggttaatagccaagctcaaaaccttgaaatctctgaacttcctgagccaagaatatttg |
22885310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 46 - 243
Target Start/End: Complemental strand, 22858341 - 22858144
Alignment:
| Q |
46 |
atgttgttaaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaatagaatgtatgttggattctcatcttcaacagggtt |
145 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
22858341 |
atgttgttaaaccagcacgacctttgttatcattcacgaaagatctttctccaattctcaacaatagaatgtatgttggattctcatcttcaaccggggt |
22858242 |
T |
|
| Q |
146 |
acttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctgagctaacaatatttg |
243 |
Q |
| |
|
| ||| |||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
22858241 |
aattgtagcttcccattatattcttggttggagttttaaggttaatggccaagctcaaaaccttgaaatctctaaacttcctgagctaagaatatttg |
22858144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 22889167 - 22888993
Alignment:
| Q |
53 |
taaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaatagaatgtatgttggattctcatcttcaacagggttacttgca |
152 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | | | |
|
|
| T |
22889167 |
taaaccaacacaacctttgttatcattgaccaaagatctttcttcaattctcaacaatagaatgtatgttggattctcatcttcaacagggttaatggta |
22889068 |
T |
|
| Q |
153 |
gcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcct |
227 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22889067 |
gcttctcagtatattcttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcct |
22888993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 22913585 - 22913375
Alignment:
| Q |
17 |
aaagattaatgttactttagctccaattgatgttgttaaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaatagaatg |
116 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||| ||||||||| |||||||||||| ||| ||| |
|
|
| T |
22913585 |
aaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttcttcaattcttaacactagtatg |
22913486 |
T |
|
| Q |
117 |
tatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatct |
216 |
Q |
| |
|
|||||||||||||||||||||||||| | | || | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
22913485 |
tatgttggattctcatcttcaacaggttcaattctaacttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatct |
22913386 |
T |
|
| Q |
217 |
ctgaacttcct |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
22913385 |
ctgaacttcct |
22913375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 22893864 - 22893595
Alignment:
| Q |
17 |
aaagattaatgttactttagctccaattgatgttgttaaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaatagaatg |
116 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
22893864 |
aaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttatcattgaccaaagatctttctccaattcttaacaatagtatg |
22893765 |
T |
|
| Q |
117 |
tatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatct |
216 |
Q |
| |
|
||||||||||| ||||| | || || | | || | |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
22893764 |
tatgttggattttcatcagctactggttcatttctaacttctcattatattcttggttggagttttaagattaatggtcaagctcaaaaccttgtaatct |
22893665 |
T |
|
| Q |
217 |
ctgaacttcctgagctaacaatatttgatgagnnnnnnnngtcaaaatttttaactgttgggttgccttt |
286 |
Q |
| |
|
|||||||||||||| || || |||| | |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
22893664 |
ctgaacttcctgagttaccagtattagctgagaaaacgaaatcaaattttttaactgttgggttgccttt |
22893595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 46 - 243
Target Start/End: Complemental strand, 22809523 - 22809326
Alignment:
| Q |
46 |
atgttgttaaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaatagaatgtatgttggattctcatcttcaacagggtt |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |
|
|
| T |
22809523 |
atgttgttaaaccaacacgacctttgttatcattcaccaaagatctttctccaattcttaacactagtatgtatgttggattctcatcttcaacaggttc |
22809424 |
T |
|
| Q |
146 |
acttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctgagctaacaatatttg |
243 |
Q |
| |
|
|| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| || ||||| |
|
|
| T |
22809423 |
tattctatcttctcattatgttcttggttggagttttaaggttaatggtcaagctcaaaaccttgatatctctaaacttcctgagctaagaacatttg |
22809326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 53 - 287
Target Start/End: Complemental strand, 22880466 - 22880233
Alignment:
| Q |
53 |
taaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaatagaatgtatgttggattctcatcttcaacagggttacttgca |
152 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||| || | |
|
|
| T |
22880466 |
taaaccaacacgacatttgttgtcattgaccaaagatctttctccaattctcaacaatagtatgtatgttggattatcatcttcaacaaggttaatttta |
22880367 |
T |
|
| Q |
153 |
gcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctgagctaacaatatttgatgagnnnn |
252 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || | |||||| ||| |
|
|
| T |
22880366 |
gcttctcattatgttcttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgagcttcatgagccaatagtatttgctga-caaa |
22880268 |
T |
|
| Q |
253 |
nnnngtcaaaatttttaactgttgggttgcctttg |
287 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |
|
|
| T |
22880267 |
aaaagtcaaaatttttaactgttgggttacctttg |
22880233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 22830906 - 22830731
Alignment:
| Q |
53 |
taaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaatagaatgtatgttggattctcatcttcaacagggttacttgca |
152 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22830906 |
taaaccaacacaaccgacgttatcattgaccaaagatctttccccaattctcaacaatagaatgtatgttggattctcatcttcaacagggttcattgca |
22830807 |
T |
|
| Q |
153 |
gcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctg |
228 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
22830806 |
gcttctcattatattcatggttggagttttatggttaatggccaatctcaaaaccttgaaatctctgaccttcctg |
22830731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 22839927 - 22839752
Alignment:
| Q |
53 |
taaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaatagaatgtatgttggattctcatcttcaacagggttacttgca |
152 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22839927 |
taaaccaacacaaccgacgttatcattgaccaaagatctttccccaattctcaacaatagaatgtatgttggattctcatcttcaacagggttcattgca |
22839828 |
T |
|
| Q |
153 |
gcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctg |
228 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
22839827 |
gcttctcattatattcatggttggagttttatggttaatggccaatctcaaaaccttgaaatctctgaccttcctg |
22839752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 22898183 - 22897952
Alignment:
| Q |
17 |
aaagattaatgttactttagctccaattgatgttgttaaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaatagaatg |
116 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||| ||||||||||||||| | |||||||| ||| |
|
|
| T |
22898183 |
aaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttgtcattgaccagagatctttctccaattttaaacaatagtatg |
22898084 |
T |
|
| Q |
117 |
tatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatct |
216 |
Q |
| |
|
||||||||||| ||||| | || || | | || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
22898083 |
tatgttggattttcatcagctactggttcagttttcacttctcattatattcttggttggagttttaaggttaatggtcaagctgaaaaccttgtaatct |
22897984 |
T |
|
| Q |
217 |
ctgaacttcctgagctaacaatatttgatgag |
248 |
Q |
| |
|
||||||||||| ||||| ||| ||||| |||| |
|
|
| T |
22897983 |
ctgaacttcctaagctaccaagatttggtgag |
22897952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 22826169 - 22825903
Alignment:
| Q |
17 |
aaagattaatgttactttagctccaattgatgttgttaaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaacaatagaatg |
116 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||| |||||| |||||||| | |||||||| ||| |
|
|
| T |
22826169 |
aaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttttcattgaccagagatcttcctccaattttgaacaatagtatg |
22826070 |
T |
|
| Q |
117 |
tatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatct |
216 |
Q |
| |
|
||||||||||||||||| | || || | | || |||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||| ||| | |
|
|
| T |
22826069 |
tatgttggattctcatcagctactggttcagttttcacttctcattatattcttggttgaagttttaagcttaatggtcaagctcaaaatcttgtaattt |
22825970 |
T |
|
| Q |
217 |
ctgaacttcctgagctaacaatatttgatgagnnnnnnnngtcaaaatttttaactgttgggttgcc |
283 |
Q |
| |
|
||||||||||| | ||| || ||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
22825969 |
ctgaacttcctaaactacgaagatttggtgagaaaaaagagtccaaatttttaactgttgggttgcc |
22825903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 21150795 - 21151028
Alignment:
| Q |
18 |
aagattaatgttactttagctccaattgatgttgtt---------aaaccaacacgacctttgttatcattgaccaatgatctttctccaattcttaaca |
108 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | |||||| || |||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
21150795 |
aagattaatgttactttagctccaattagtgttggttttaataaaaaaccagcaagacctttgttatcattgaccaaagatctttctccagttctcaaca |
21150894 |
T |
|
| Q |
109 |
atagaatgtatgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaacct |
208 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
21150895 |
atagtatgtatgttggattctcatcttcaacagggttacttgcagcttctcattatattcttggttggagttttaaggttaatggcctggctcaaaacct |
21150994 |
T |
|
| Q |
209 |
tgaaatctctgaacttcctgagctaacaatattt |
242 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |
|
|
| T |
21150995 |
tgaaatctctgaacttcctgaagtaacagtattt |
21151028 |
T |
|
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