View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15845_low_14 (Length: 253)
Name: NF15845_low_14
Description: NF15845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15845_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 8315742 - 8315872
Alignment:
| Q |
101 |
tggggttaacacgttttttagataaaaatggcccaaattggnnnnnnnnnnnnnacaaaatgaatttggtaaaaacaaaagagtctcaagtttgaaccct |
200 |
Q |
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| T |
8315742 |
tggggttaacccgttttttagataaaaatggcccaaattggttttttagtttttacaaaatgaatttggcaaaaacaaaagagtctcaagtttgaaccct |
8315841 |
T |
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| Q |
201 |
gcggcgtcacagtctcaaattctgaacgaga |
231 |
Q |
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| T |
8315842 |
gcggcgtcacagtctcaaattctgaacgaga |
8315872 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 8315643 - 8315687
Alignment:
| Q |
15 |
aatattattttcaatctggattagtaaatttggaggggtataatt |
59 |
Q |
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| T |
8315643 |
aatattattttcaatctggattagtaaatttggaggggtataatt |
8315687 |
T |
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