View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15845_low_20 (Length: 206)
Name: NF15845_low_20
Description: NF15845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15845_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 41 - 180
Target Start/End: Complemental strand, 32299206 - 32299067
Alignment:
| Q |
41 |
ctttgataattcattgcaccctacttggattttgcaacctctattcccaagaagaactgttgcaatttgctaaggtcttttgtctgaaagtgatgagaaa |
140 |
Q |
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| T |
32299206 |
ctttgataattcattgcaccctacttggattttgcaacctctattcccaagaagaactgttgcaatttgctaaggtcttttgtctgaaagtgatgagaaa |
32299107 |
T |
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| Q |
141 |
tgtttttgtactacctgatatatgtcatgatagttggtac |
180 |
Q |
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| T |
32299106 |
tgtttttgtactacctgatatatgtcatgatagttggtac |
32299067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 32313332 - 32313200
Alignment:
| Q |
44 |
tgataattcattgcaccctacttggattttgcaacctctattcccaagaagaactgttgcaatttgctaaggtcttttgtctgaaagtgatgagaaatgt |
143 |
Q |
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| T |
32313332 |
tgataagtcactgcactatactaggattttgcgacctctattctcaagaa---ctattgcaatttgctaaggtcatttgtttgaaagt-atgagaaatgt |
32313237 |
T |
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| Q |
144 |
ttttgtactacctgatatatgtcatgatagttggtac |
180 |
Q |
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| T |
32313236 |
ttttgtgctacctgagatatgtcatgatggttggtac |
32313200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39797835 - 39797879
Alignment:
| Q |
1 |
tagacacccaaacgtaagccagctgcttgtatgttttatcctttg |
45 |
Q |
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| T |
39797835 |
tagacacccaaacgtaagccagttacttgtatgttttatcctttg |
39797879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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