View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15845_low_3 (Length: 634)
Name: NF15845_low_3
Description: NF15845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15845_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 514
Target Start/End: Complemental strand, 30768442 - 30767942
Alignment:
| Q |
14 |
catcaaaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatcgcctcggctacgacagaccaagcaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768442 |
catcaaaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatcgcctcggctacgacagaccaagcaa |
30768343 |
T |
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| Q |
114 |
agcagtggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagcttcctccatggcatccaatcggcgaaaatcaaactctgaaacct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30768342 |
agcagtggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagcttcctccatggcatccaatcagcgaaaatcaaactctgaaacct |
30768243 |
T |
|
| Q |
214 |
ctagaagaagttcagaatgtagttgcaaactcaagtggaatggttgttggagaaacatcagaatctaatggttacagttttcatcttttaagacaattaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768242 |
ctagaagaagttcagaatgtagttgcaaactcaagtggaatggttgttggagaaacatcagaatctaatggttacagttttcatcttttaagacaattaa |
30768143 |
T |
|
| Q |
314 |
gtgagaatcaaggtaaccataattcagctttcatttcaccacataatgttgaaactgatcctataccnnnnnnnccaactacatcttctacttcttcatc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30768142 |
gtgagaatcaaggtaaccataattcagctttcatttcaccacataatgttgaaactgatcctatacctttttttccaactacatcttctacttcttcatc |
30768043 |
T |
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| Q |
414 |
catcaattttcaaaactacccttctgaaaaccttggcctctctcttcattccttccaagatcacaatggtttcattccatggcaatcgcaacaagtatgt |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30768042 |
catcaattttcaaaactacccttctgaaaaccttggcctctctcttcattccttccaagatcacaatggtttcattccatggcaatcacaacaagtatgt |
30767943 |
T |
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| Q |
514 |
g |
514 |
Q |
| |
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| |
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| T |
30767942 |
g |
30767942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 559 - 620
Target Start/End: Complemental strand, 30767897 - 30767836
Alignment:
| Q |
559 |
ttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatat |
620 |
Q |
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| T |
30767897 |
ttttttgagaaccaatatcatagaattgagaattggaacaatgaaacaaccaatgattatat |
30767836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 39077411 - 39077242
Alignment:
| Q |
19 |
aaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatcgcctcggctacgacagaccaagcaaagcag |
118 |
Q |
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||||||||||| ||||| | |||||| | |||||||||||||| || ||||||| ||||||||||| || ||||||||||||||||| || ||||| | |
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| T |
39077411 |
aaaggtcctcgtgatcgacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctg |
39077312 |
T |
|
| Q |
119 |
tggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagcttcctccatggcatccaat |
188 |
Q |
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| |||||||| ||||| || || |||||| |||||||||| || | ||||||| |||||| ||||||| |
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| T |
39077311 |
ttgattggcttatcaaaaaggctaagtctgccattgacaaacttgatcagcttccaccatggaatccaat |
39077242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 22328000 - 22328097
Alignment:
| Q |
43 |
cgactctcagcacacacagccatcgaattctacgatgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagc |
140 |
Q |
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||||||||||| ||||| || || |||||||||| || |||||||| |||||||||||| | ||||| |||||||| ||||||||||| || ||||| |
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| T |
22328000 |
cgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctcggctacgaccggccaagtaaagcagtcgattggctcattaaaaaagc |
22328097 |
T |
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