View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15845_low_5 (Length: 491)
Name: NF15845_low_5
Description: NF15845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15845_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 46227811 - 46227351
Alignment:
| Q |
1 |
catgcatatgagtgatgatgatgataattaatggtccccctccctcatttccagttctgtatgtcttgctataaatcaacattcaaatcatcaaataatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46227811 |
catgcatatgagtgatgatgatgataattaatggtccccctccctcatttccagttctgtatgtcttgctataaatcaacattcaaatcatcaaataatt |
46227712 |
T |
|
| Q |
101 |
atatattcttattcttataaattaatactagttttctaaccccactgcctcaaataattaatcattcatattgatctttttgcgtacacactgtgagtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46227711 |
atatattcttattcttataaattaatactagttttctaaccccactgcctcaaat----------------tgatctttttgcgtacacactgtgagtct |
46227628 |
T |
|
| Q |
201 |
gtgctggatgcgatcccttttcattgcaattttcatgaacccgtgttcaactaaaaagccaaacggagttatactagtactacaaa-------ctaagac |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46227627 |
gtgctggatgcgatcccttttcattgcaattttcatgaacccgtgttcaactaaaaagccaaacggagttatactagtactacaaagtacaaactaagac |
46227528 |
T |
|
| Q |
294 |
agagactaataatgtacgaattgggaatctaagggagggattaaggctgtttaattcccattgaacaaaagagagagtcatgcatacccaataaaaacat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46227527 |
agagactaataatgtacgaattgggaatctaagggagggattaaagctgtttaattcccattgaacaaaagagagagtcatgcatacccaataaaaacat |
46227428 |
T |
|
| Q |
394 |
cagagccatcacacatttcacgatgtcgtatgtacataagcctcaaactcttgagcctgttttttaagtcagaccag |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46227427 |
cagagccatcacacatttcacgatgtcgtatgtacataagcctcaaactcttgagcctgttttttaagtcagaccag |
46227351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University