View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15845_low_6 (Length: 482)

Name: NF15845_low_6
Description: NF15845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15845_low_6
NF15845_low_6
[»] chr4 (14 HSPs)
chr4 (14-248)||(8483407-8483640)
chr4 (299-382)||(8483691-8483774)
chr4 (89-243)||(23780225-23780379)
chr4 (124-185)||(327061-327122)
chr4 (118-209)||(43364205-43364296)
chr4 (134-209)||(48284320-48284395)
chr4 (84-186)||(44833920-44834022)
chr4 (104-240)||(43955574-43955715)
chr4 (117-243)||(32896562-32896692)
chr4 (104-158)||(10334135-10334189)
chr4 (103-165)||(14126328-14126390)
chr4 (132-185)||(7672571-7672624)
chr4 (134-243)||(18740066-18740175)
chr4 (132-177)||(48141299-48141344)
[»] chr2 (3 HSPs)
chr2 (122-243)||(13783359-13783480)
chr2 (104-198)||(27081033-27081127)
chr2 (84-185)||(33382025-33382126)
[»] chr7 (7 HSPs)
chr7 (89-185)||(27305505-27305601)
chr7 (119-204)||(23803063-23803148)
chr7 (119-178)||(16813805-16813864)
chr7 (81-190)||(43341020-43341129)
chr7 (105-158)||(43951300-43951353)
chr7 (122-198)||(19367137-19367213)
chr7 (118-158)||(4922709-4922749)
[»] chr6 (7 HSPs)
chr6 (88-243)||(20836609-20836764)
chr6 (132-185)||(9619565-9619618)
chr6 (84-243)||(18271671-18271830)
chr6 (124-185)||(33427683-33427744)
chr6 (89-163)||(20116400-20116473)
chr6 (89-158)||(14569914-14569983)
chr6 (102-154)||(12852272-12852324)
[»] chr3 (7 HSPs)
chr3 (132-243)||(33186248-33186358)
chr3 (84-197)||(55216805-55216913)
chr3 (84-205)||(25653511-25653633)
chr3 (120-167)||(40654130-40654177)
chr3 (115-185)||(29630149-29630219)
chr3 (89-185)||(8473238-8473329)
chr3 (118-190)||(26662035-26662107)
[»] chr8 (5 HSPs)
chr8 (84-162)||(2259761-2259834)
chr8 (81-163)||(3639863-3639940)
chr8 (123-190)||(30595461-30595528)
chr8 (84-158)||(35699692-35699761)
chr8 (151-203)||(18605249-18605301)
[»] chr1 (7 HSPs)
chr1 (94-184)||(44011739-44011829)
chr1 (89-179)||(22786624-22786719)
chr1 (123-165)||(11619402-11619444)
chr1 (103-157)||(34821626-34821680)
chr1 (117-156)||(1347839-1347878)
chr1 (102-165)||(32567091-32567154)
chr1 (84-160)||(15661575-15661646)
[»] chr5 (7 HSPs)
chr5 (84-215)||(5131272-5131403)
chr5 (120-166)||(43399392-43399438)
chr5 (89-167)||(43259884-43259957)
chr5 (124-203)||(6644820-6644904)
chr5 (89-163)||(34071386-34071460)
chr5 (124-165)||(27946905-27946946)
chr5 (102-158)||(16489134-16489190)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 8483407 - 8483640
Alignment:
Q  14 gaacttgcacaaagtttagctattgaaagaaattaaagaataaaagctaaaaattccataaatgcaaggatgggtatggttcgattcaggatgaaaactg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  8483407 gaacttgcacaaagtttagctattgaaagaaattaaagaataaaagctaaaaactccataaatgcatggatgggtatggttcgattcaggatgaaaactg 8483506  T
Q  114 aaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaactaaactttttcaaatcgaaccgaacagtt 213  Q
    ||  |||| ||| ||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||| ||||||||||||||||||||||||||||    
T  8483507 aac-aaacagaattaaattgtttgttaaatttaaaataactgaaccgaactgttcatattttaaattgaaccaaactttttcaaatcgaaccgaacagtt 8483605  T
Q  214 tcaaatcaaaccgaattgttattattgataacgtt 248  Q
    |||||||||||||||||||||||||||||||||||    
T  8483606 tcaaatcaaaccgaattgttattattgataacgtt 8483640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 299 - 382
Target Start/End: Original strand, 8483691 - 8483774
Alignment:
Q  299 cgaaccaatctgtttggaatcaaaccttattgttttgaactaaaccgaattgtttcagttccaaaattgttaacaatggtacga 382  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8483691 cgaaccaaactgtttggaatcaaaccttattgttttgaactaaaccgaattgtttcagttccaaaattgttagcaatggtacga 8483774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 23780225 - 23780379
Alignment:
Q  89 atggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaactaaa 188  Q
    |||||||  ||| ||||||||||||||   ||  ||||| ||||||||| ||||| |||||||| ||||| |||||||| | |||| ||| |||||| ||    
T  23780225 atggttcagttcgggatgaaaactgaaccgaattgaacttaattgtttgctaaatctaaaataattgaactgaactgtttgtatttcgaactgaactgaa 23780324  T
Q  189 ctttttcaaatcgaaccgaacagtttcaaatcaaaccgaattgttattattgata 243  Q
    || ||||||| | ||| |||| ||||| ||   ||||||||||||||||||||||    
T  23780325 ctgtttcaaaccaaactgaactgtttcgaactgaaccgaattgttattattgata 23780379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 327061 - 327122
Alignment:
Q  124 aactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaact 185  Q
    |||| ||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||    
T  327061 aactgaattgtttgctaaatttaaaataactgaactgaactgtttgcattttaaattgaact 327122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 43364296 - 43364205
Alignment:
Q  118 aaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaactaaactttttcaaatcgaaccgaac 209  Q
    |||| ||||| || |||||| |||||||||||||||||||| |||||||| |||||| |||| ||||| |||| ||| ||| ||||| ||||    
T  43364296 aaacggaactgaactgtttgctaaatttaaaataactgaactgaactgtttgcatttcgaatcgaactgaactgttttaaaccgaactgaac 43364205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 48284395 - 48284320
Alignment:
Q  134 tttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaactaaactttttcaaatcgaaccgaac 209  Q
    |||||||||||||||||||||||| ||||||||| | ||||||| ||||||  |||| ||||||| | ||||||||    
T  48284395 tttgttaaatttaaaataactgaatcgaactgtttggattttgatttgaaccgaactgtttcaaaccaaaccgaac 48284320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 44833920 - 44834022
Alignment:
Q  84 tgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaa 183  Q
    ||||||||||||| ||| ||||||||| ||||   || | || | || |||||| |||||||||||||||||||| |||||||| | |||||||| ||||    
T  44833920 tgggtatggttcggttcgggatgaaaattgaaccgaatcaaattgaactgtttgctaaatttaaaataactgaactgaactgtttgtattttgaactgaa 44834019  T
Q  184 cta 186  Q
    |||    
T  44834020 cta 44834022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 43955715 - 43955574
Alignment:
Q  104 atgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaac-----cgaactgttcgcattttgaattgaactaaactttttcaaa 198  Q
    ||||||||||||   ||||||| |||| |  ||||||||||||||||||||||||     ||||||||| |||||| ||| |||||  |||| || ||||    
T  43955715 atgaaaactgaaccgaaccgaattaaactacttgttaaatttaaaataactgaacttaatcgaactgtttgcatttcgaactgaacagaactgttccaaa 43955616  T
Q  199 tcgaaccgaacagtttcaaatcaaaccgaattgttattattg 240  Q
     |||| ||||| ||||| || | |||||||||||| ||||||    
T  43955615 ccgaaacgaactgtttcgaaccgaaccgaattgttgttattg 43955574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 243
Target Start/End: Complemental strand, 32896692 - 32896562
Alignment:
Q  117 taaaccgaactaaattgtttgttaaatttaaaataac-----tgaaccgaactgttcgcattttgaattgaactaaactttttcaaatcgaaccgaacag 211  Q
    ||||||||||| || |||||| ||||||||| |||||     |||||||||||||| |||||||||| |||||  || | ||| ||| |||||||||  |    
T  32896692 taaaccgaactgaactgtttgctaaatttaagataactgagttgaaccgaactgtttgcattttgaactgaaccgaattgttttaaaccgaaccgaattg 32896593  T
Q  212 tttcaaatcaaaccgaattgttattattgata 243  Q
    ||| ||||  ||||||| ||||||||||||||    
T  32896592 tttgaaat-gaaccgaactgttattattgata 32896562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 10334135 - 10334189
Alignment:
Q  104 atgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaac 158  Q
    |||||||||||| | ||||||||| |||||||||||||||| ||||||| |||||    
T  10334135 atgaaaactgaattgaaccgaactgaattgtttgttaaattcaaaataattgaac 10334189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 14126328 - 14126390
Alignment:
Q  103 gatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactg 165  Q
    |||||||||||||   ||||||||| || |||||| ||||||||||| ||||||||| |||||    
T  14126328 gatgaaaactgaatcgaaccgaactcaactgtttgctaaatttaaaaaaactgaaccaaactg 14126390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 7672571 - 7672624
Alignment:
Q  132 tgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaact 185  Q
    |||||| ||||||||||||||||||||  || |||| |||||| ||||||||||    
T  7672571 tgtttgctaaatttaaaataactgaactaaattgtttgcatttcgaattgaact 7672624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 18740175 - 18740066
Alignment:
Q  134 tttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaactaaactttttcaaatcgaaccgaacagtttcaaatcaaaccgaattgtt 233  Q
    |||| ||||||||||||||  |||| ||| |||| |||||| ||| |||||| || | ||||||| ||||| |||| ||||| ||   ||||||| ||||    
T  18740175 tttgctaaatttaaaataatagaactgaattgtttgcatttcgaactgaactgaattgtttcaaaccgaactgaactgtttcgaactgaaccgaactgtt 18740076  T
Q  234 attattgata 243  Q
    || |||||||    
T  18740075 ataattgata 18740066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 48141344 - 48141299
Alignment:
Q  132 tgtttgttaaatttaaaataactgaaccgaactgttcgcattttga 177  Q
    |||||| |||||||||||||||||||| ||| |||| |||||||||    
T  48141344 tgtttgctaaatttaaaataactgaactgaattgtttgcattttga 48141299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 243
Target Start/End: Complemental strand, 13783480 - 13783359
Alignment:
Q  122 cgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaactaaactttttcaaatcgaaccgaacagtttcaaatca 221  Q
    |||||| |||||||||||||||||||||||||| ||| ||| |||| ||||||| ||||||||| |||| |||||||  |||| |||| | ||  |||      
T  13783480 cgaactgaattgtttgttaaatttaaaataactaaactgaattgtttgcattttaaattgaactgaactgtttcaaacagaactgaactgatttgaattg 13783381  T
Q  222 aaccgaattgttattattgata 243  Q
    ||||||| ||||||||||||||    
T  13783380 aaccgaactgttattattgata 13783359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 27081127 - 27081033
Alignment:
Q  104 atgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaactaaactttttcaaa 198  Q
    ||||||||||||   ||| ||||| || |||||| |||||||||||||||||||  |||||||| |||||||||| |||||| |||| |||||||    
T  27081127 atgaaaactgaaccgaactgaactgaactgtttgctaaatttaaaataactgaattgaactgtttgcattttgaactgaactgaactgtttcaaa 27081033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 33382126 - 33382025
Alignment:
Q  84 tgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaa 183  Q
    |||| ||||||| |||| |||| |||||||||   ||| ||||| ||||||||| ||| ||||||||||||||||  ||||||| |||||| ||||||||    
T  33382126 tgggcatggttcaattcgggataaaaactgaaccgaactgaactgaattgtttgctaactttaaaataactgaacttaactgtttgcatttcgaattgaa 33382027  T
Q  184 ct 185  Q
    ||    
T  33382026 ct 33382025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 27305505 - 27305601
Alignment:
Q  89 atggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaact 185  Q
    |||||||| ||||||||||||||||||   || | ||||  |||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||    
T  27305505 atggttcggttcaggatgaaaactgaaccgaatcaaactgcattgtttgctaaatttaaaataactaaactgaactgttagcattttgaattgaact 27305601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 23803063 - 23803148
Alignment:
Q  119 aaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaactaaactttttcaaatcgaac 204  Q
    |||| |||| ||||||||| |||||||||||||| ||||| ||||||||  ||||| |||||||||| |||| ||||||| |||||    
T  23803063 aaccaaactgaattgtttgctaaatttaaaataattgaactgaactgtttacatttcgaattgaactgaactgtttcaaaccgaac 23803148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 16813864 - 16813805
Alignment:
Q  119 aaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaa 178  Q
    ||||||||| || |||||| |||||||||||||||||||| |||||||| ||||||||||    
T  16813864 aaccgaactgaactgtttgctaaatttaaaataactgaacagaactgtttgcattttgaa 16813805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 43341020 - 43341129
Alignment:
Q  81 ggatgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaatt 180  Q
    ||||||| |||||||  ||| ||||||||||||||  |||   |||| ||||||||| ||||||||||||||||||||  ||| ||| |||||| ||| |    
T  43341020 ggatgggaatggttcagttcgggatgaaaactgaaccaaattaaactgaattgtttgataaatttaaaataactgaactaaaccgtttgcatttcgaact 43341119  T
Q  181 gaactaaact 190  Q
    ||||| ||||    
T  43341120 gaactgaact 43341129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 43951300 - 43951353
Alignment:
Q  105 tgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaac 158  Q
    |||||| |||| ||||| ||||||||||||||| |||||||||||||| |||||    
T  43951300 tgaaaattgaattaaactgaactaaattgtttgctaaatttaaaataattgaac 43951353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 19367137 - 19367213
Alignment:
Q  122 cgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaactaaactttttcaaa 198  Q
    |||||| || |||||| |||||||||||||||||||| |||||||| | |||| ||| |||||| || | |||||||    
T  19367137 cgaactgaactgtttgctaaatttaaaataactgaactgaactgtttgtatttcgaactgaactgaattgtttcaaa 19367213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 4922749 - 4922709
Alignment:
Q  118 aaaccgaactaaattgtttgttaaatttaaaataactgaac 158  Q
    |||| ||||| ||||||||| ||||||||||||||||||||    
T  4922749 aaactgaactgaattgtttgctaaatttaaaataactgaac 4922709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 243
Target Start/End: Original strand, 20836609 - 20836764
Alignment:
Q  88 tatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaactaa 187  Q
    ||||||||  ||| ||||||||||||||   ||| |||||||| |||||| ||||| |||||||||||||| |||||||| |||||| ||| |||||  |    
T  20836609 tatggttcagttcgggatgaaaactgaaccgaactgaactaaactgtttgctaaatctaaaataactgaactgaactgtttgcatttcgaactgaacgga 20836708  T
Q  188 actttttcaaatcgaaccgaacagtttcaaatcaaaccgaattgttattattgata 243  Q
    ||| ||||||| ||||| |||| ||| ||||   ||  ||| ||||||||||||||    
T  20836709 actgtttcaaaccgaactgaactgttccaaactgaattgaactgttattattgata 20836764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 9619618 - 9619565
Alignment:
Q  132 tgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaact 185  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||| ||||||    
T  9619618 tgtttgtcaaatttaaaataactgaaccgaactgtttgcattttgaactgaact 9619565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 18271671 - 18271830
Alignment:
Q  84 tgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaa 183  Q
    |||| |||||||  ||| ||||||||||||||   ||| ||||| || ||| || |||||||||||||||||||| |||||||| ||||||  ||   ||    
T  18271671 tgggcatggttcagttctggatgaaaactgaaccgaactgaactgaactgtgtgctaaatttaaaataactgaactgaactgtttgcatttcaaaccaaa 18271770  T
Q  184 ctaaactttttcaaatcgaaccgaacagtttcaaatcaaaccgaattgttattattgata 243  Q
    || |||| ||||||| ||||| |||| ||| | ||   ||| ||||||||||||||||||    
T  18271771 ctgaactgtttcaaaccgaactgaactgttccgaactgaactgaattgttattattgata 18271830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 33427683 - 33427744
Alignment:
Q  124 aactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaact 185  Q
    |||| |||| ||||||||||||||||||||||||  |||||||| |||||||||| ||||||    
T  33427683 aactgaattatttgttaaatttaaaataactgaattgaactgtttgcattttgaactgaact 33427744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 20116473 - 20116400
Alignment:
Q  89 atggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaac 163  Q
    |||| ||||||| ||||||||| |||||  |||| ||||||| |||||||| |||||||||||||| ||||||||    
T  20116473 atggatcgattcgggatgaaaattgaaactaaccaaactaaactgtttgtttaatttaaaataact-aaccgaac 20116400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 14569983 - 14569914
Alignment:
Q  89 atggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaac 158  Q
    ||||||| |||||||||||||||||||  |||   ||||||| ||||| |||| ||||||||||||||||    
T  14569983 atggttcaattcaggatgaaaactgaatcaaattaaactaaactgtttattaagtttaaaataactgaac 14569914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 12852324 - 12852272
Alignment:
Q  102 ggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataact 154  Q
    ||||||||||||||   |||||| |||||||||||||||||||||||| ||||    
T  12852324 ggatgaaaactgaaccgaaccgatctaaattgtttgttaaatttaaaacaact 12852272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 33186358 - 33186248
Alignment:
Q  132 tgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaactaaactttttcaaatcgaaccgaacagtttcaaatcaaaccgaattg 231  Q
    ||||||||||||||||||||||||||| |||||||| ||||||  || |||| | |||| ||||||| ||||| |||  ||| ||||  |||| ||||||    
T  33186358 tgtttgttaaatttaaaataactgaactgaactgtt-gcatttcaaactgaattgaactgtttcaaaccgaactgaattgttccaaactaaactgaattg 33186260  T
Q  232 ttattattgata 243  Q
    ||||||||||||    
T  33186259 ttattattgata 33186248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 197
Target Start/End: Complemental strand, 55216913 - 55216805
Alignment:
Q  84 tgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaa 183  Q
    |||| ||||||| |||  |||||||||||||| | ||| ||||||     ||||||||||||||||||||||||| |||||||| |||||| ||| ||||    
T  55216913 tgggcatggttcaattagggatgaaaactgaactgaactgaacta-----tttgttaaatttaaaataactgaactgaactgtttgcatttcgaactgaa 55216819  T
Q  184 ctaaactttttcaa 197  Q
    || |||| ||||||    
T  55216818 ctgaactgtttcaa 55216805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 25653633 - 25653511
Alignment:
Q  84 tgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaattt-aaaataactgaaccgaactgttcgcattttgaattga 182  Q
    |||| |||| ||| ||| ||||||||||||||   || ||||||||| |||||| ||||||| |||||||||||| || |||||| ||||||| || |||    
T  25653633 tgggcatggctcggttcgggatgaaaactgaaccgaatcgaactaaactgtttgataaatttaaaaataactgaatcgtactgtttgcattttaaactga 25653534  T
Q  183 actaaactttttcaaatcgaacc 205  Q
    |||||| | || ||||| |||||    
T  25653533 actaaattgttccaaattgaacc 25653511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 40654130 - 40654177
Alignment:
Q  120 accgaactaaattgtttgttaaatttaaaataactgaaccgaactgtt 167  Q
    |||||||| || ||||||||||||||||||||||||||| ||||||||    
T  40654130 accgaactgaactgtttgttaaatttaaaataactgaactgaactgtt 40654177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 29630219 - 29630149
Alignment:
Q  115 aataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaact 185  Q
    ||||||| ||||| || |||||| ||||||| |||||||||||| |||||||| |||||| ||| ||||||    
T  29630219 aataaactgaactgaactgtttgctaaatttgaaataactgaactgaactgtttgcatttcgaactgaact 29630149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 8473329 - 8473238
Alignment:
Q  89 atggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaact 185  Q
    |||||||  ||||||||||||||||||      |||||| || |||||| ||||| |||| ||||||||| ||||| || |||||||||||||||||    
T  8473329 atggttcagttcaggatgaaaactgaat-----cgaactgaactgtttgctaaatctaaactaactgaactgaactctttgcattttgaattgaact 8473238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 26662107 - 26662035
Alignment:
Q  118 aaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaactaaact 190  Q
    |||| |||| |||||| ||| |||||||||||||||| ||| |||||||| |||||| ||| |||||| ||||    
T  26662107 aaactgaaccaaattgcttgctaaatttaaaataactaaactgaactgtttgcatttcgaactgaactgaact 26662035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 2259761 - 2259834
Alignment:
Q  84 tgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaa 162  Q
    ||||||||||||| |||| |||||||||||||     ||||||| |||||||||||||||||||||||| |||||||||    
T  2259761 tgggtatggttcggttcaagatgaaaactgaa-----ccgaactgaattgtttgttaaatttaaaataattgaaccgaa 2259834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 3639940 - 3639863
Alignment:
Q  81 ggatgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaac 163  Q
    ||||||| |||||||  ||||||||||||||||||     ||||||| || ||||||||||||||||||||||||||||||||    
T  3639940 ggatgggcatggttcatttcaggatgaaaactgaa-----ccgaactgaaatgtttgttaaatttaaaataactgaaccgaac 3639863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 30595461 - 30595528
Alignment:
Q  123 gaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaactaaact 190  Q
    ||||| ||||||||| ||||||||||||||| |||| ||| |||| |||||| |||||||||| ||||    
T  30595461 gaactgaattgtttgctaaatttaaaataaccgaactgaattgtttgcatttcgaattgaactgaact 30595528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 35699761 - 35699692
Alignment:
Q  84 tgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaac 158  Q
    |||| |||||||| ||| ||||||||||||||     ||||||| ||||||||| |||||||||||||| |||||    
T  35699761 tgggcatggttcggttcgggatgaaaactgaa-----ccgaactgaattgtttgataaatttaaaataattgaac 35699692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 18605249 - 18605301
Alignment:
Q  151 aactgaaccgaactgttcgcattttgaattgaactaaactttttcaaatcgaa 203  Q
    ||||||||||||||||| |||||| ||| |||||| |||| ||||||| ||||    
T  18605249 aactgaaccgaactgtttgcatttcgaactgaactgaactgtttcaaaccgaa 18605301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 44011739 - 44011829
Alignment:
Q  94 tcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaac 184  Q
    |||||||||||| |||||||||   ||||||||| || |||||| ||||||||| |||||||||| |||||||| |||||| ||| |||||    
T  44011739 tcgattcaggattaaaactgaatcgaaccgaactgaactgtttgataaatttaatataactgaactgaactgtttgcatttcgaactgaac 44011829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 22786719 - 22786624
Alignment:
Q  89 atggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaat-----aactgaaccgaactgttcgcattttgaat 179  Q
    |||||||| ||| ||||||||||||||   ||||||||| || |||||| ||||||||||||     ||||||||| |||||||||||||| ||||    
T  22786719 atggttcggttcgggatgaaaactgaaccgaaccgaactgaactgtttgctaaatttaaaataattgaactgaaccaaactgttcgcatttcgaat 22786624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 11619444 - 11619402
Alignment:
Q  123 gaactaaattgtttgttaaatttaaaataactgaaccgaactg 165  Q
    |||||| ||||||||||||||||||||||||| ||||||||||    
T  11619444 gaactagattgtttgttaaatttaaaataacttaaccgaactg 11619402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 34821626 - 34821680
Alignment:
Q  103 gatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaa 157  Q
    |||||||||||||  |||||||||| || |||||| |||||||||||||||||||    
T  34821626 gatgaaaactgaaccaaaccgaactgaactgtttgctaaatttaaaataactgaa 34821680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 1347878 - 1347839
Alignment:
Q  117 taaaccgaactaaattgtttgttaaatttaaaataactga 156  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  1347878 taaaccgaacttaattgtttgctaaatttaaaataactga 1347839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 32567091 - 32567154
Alignment:
Q  102 ggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactg 165  Q
    ||||||||||||||   |||  |||| |||||||| || |||||||||||||||||||||||||    
T  32567091 ggatgaaaactgaaccgaactaaactgaattgtttattgaatttaaaataactgaaccgaactg 32567154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 15661575 - 15661646
Alignment:
Q  84 tgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccg 160  Q
    ||||||||||||| ||||| |||||| |||||     |||||||||| | |||| |||||||||||||||| |||||    
T  15661575 tgggtatggttcggttcagaatgaaatctgaa-----ccgaactaaactatttgctaaatttaaaataactaaaccg 15661646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 5131403 - 5131272
Alignment:
Q  84 tgggtatggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgttcgcattttgaattgaa 183  Q
    ||||||||||||  ||  ||||||||||||||   ||| |||||||| | |||| ||||||||||||||  |||| ||||||||  ||||| ||| ||||    
T  5131403 tgggtatggttcagtttgggatgaaaactgaaccgaactgaactaaactatttgctaaatttaaaataatagaactgaactgtttacatttcgaactgaa 5131304  T
Q  184 ctaaactttttcaaatcgaaccgaacagtttc 215  Q
    || |||| ||||||| ||||| |||| |||||    
T  5131303 ctgaactgtttcaaaccgaactgaactgtttc 5131272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 43399392 - 43399438
Alignment:
Q  120 accgaactaaattgtttgttaaatttaaaataactgaaccgaactgt 166  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  43399392 accgaaccaaattgtttgctaaatttaaaataactgaaccgaactgt 43399438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 43259957 - 43259884
Alignment:
Q  89 atggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaactgtt 167  Q
    |||||||  ||||||||||||||||||      |||||| || ||||||||||||||||||||||||||| ||||||||    
T  43259957 atggttcagttcaggatgaaaactgaat-----cgaactgaactgtttgttaaatttaaaataactgaactgaactgtt 43259884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 6644904 - 6644820
Alignment:
Q  124 aactaaattgtttgttaaatttaaaataac-----tgaaccgaactgttcgcattttgaattgaactaaactttttcaaatcgaa 203  Q
    |||||||||||||| |||||||||||||||     ||||||||||| || |||||| ||| |||||| |||| ||||||| ||||    
T  6644904 aactaaattgtttgctaaatttaaaataactgaattgaaccgaactatttgcatttcgaactgaactgaactgtttcaaaccgaa 6644820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 34071460 - 34071386
Alignment:
Q  89 atggttcgattcaggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaaccgaac 163  Q
    |||||||| ||| || |||||||| ||  ||| | |||| ||||||||| ||||||||||||||||||| |||||    
T  34071460 atggttcggttcgggttgaaaactaaaccaaatcaaactgaattgtttgataaatttaaaataactgaatcgaac 34071386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 27946905 - 27946946
Alignment:
Q  124 aactaaattgtttgttaaatttaaaataactgaaccgaactg 165  Q
    |||| |||||||||||||||||||||||||| ||| ||||||    
T  27946905 aactgaattgtttgttaaatttaaaataactaaactgaactg 27946946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 16489134 - 16489190
Alignment:
Q  102 ggatgaaaactgaaataaaccgaactaaattgtttgttaaatttaaaataactgaac 158  Q
    ||||||||||||||   ||||||||| |||| ||| ||||||||||||||| |||||    
T  16489134 ggatgaaaactgaaccgaaccgaactgaattatttattaaatttaaaataattgaac 16489190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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