View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15845_low_8 (Length: 388)
Name: NF15845_low_8
Description: NF15845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15845_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 10071964 - 10072323
Alignment:
| Q |
18 |
aacttttcctatgagaatcaacaatgtgctagttcttgtctagcatggtactaaacaagatgttggttcttgtcaagttgcagaagcattgttgttggac |
117 |
Q |
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| T |
10071964 |
aacttttcctatgagaatcaacaatgtgctagttcttgtctagcatggtactaagcaagatgttggttcttgtcaagttgcagaagcattgttgttggac |
10072063 |
T |
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| Q |
118 |
tctagaacggttggctcattgtaatagttcaaatgatgtaattcgtcaacccaaatccacgaaaaaattcttcatatagtgataaaaaatgctattgata |
217 |
Q |
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| T |
10072064 |
tctagcacggttggctcattgtaatagttcaaatgatgtaattcgtcaacccaaatccac-aaaaaattcttcatatagtgacaaaaaatgctattgata |
10072162 |
T |
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| Q |
218 |
gcatttttctatcattgaatatagaatccatactttccatggatcaagtgctacgaatttcatcgttttgaactaataatatctatacaaaatattaatt |
317 |
Q |
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| T |
10072163 |
gcatttttctatcactgaatatagaatccatactttccatggatcaagtgctacgaatttcatcgttttgaactaataatatctatacaaaatattaatt |
10072262 |
T |
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| Q |
318 |
catgtctttctcttaagagctaggtaaattccgagatctagagaaggagaacttgcctatg |
378 |
Q |
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| T |
10072263 |
catgtctttctcataagagctaggtaaattccgagatctagagaaggagaacttgtctatg |
10072323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 10103697 - 10103780
Alignment:
| Q |
273 |
aatttcatcgttttgaactaataatatctatacaaaatattaattcatgtctttctcttaagagctaggtaaattccgagatctag |
358 |
Q |
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| T |
10103697 |
aatttcatcgctttgaactaatataatctatac--aatattaattcatctcttccccataagagctacgtaacttccaagatctag |
10103780 |
T |
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