View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15846_high_1 (Length: 647)

Name: NF15846_high_1
Description: NF15846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15846_high_1
NF15846_high_1
[»] chr5 (3 HSPs)
chr5 (80-422)||(40541906-40542243)
chr5 (570-638)||(40542388-40542456)
chr5 (12-62)||(5010829-5010879)
[»] chr2 (1 HSPs)
chr2 (70-316)||(6658920-6659167)
[»] chr4 (2 HSPs)
chr4 (72-277)||(3796252-3796458)
chr4 (598-638)||(7780084-7780124)
[»] chr3 (2 HSPs)
chr3 (5-62)||(11783148-11783205)
chr3 (7-53)||(11500880-11500926)
[»] chr8 (2 HSPs)
chr8 (7-55)||(32323814-32323862)
chr8 (7-53)||(29608360-29608406)
[»] chr1 (1 HSPs)
chr1 (7-55)||(28113117-28113165)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 80 - 422
Target Start/End: Original strand, 40541906 - 40542243
Alignment:
Q  80 gaaatgctgcagttaaccaggggcagaatccttgtgaaattgtatgaatctctggnnnnnnngcaatttgccggtgcttttgtgtggagcagaatcaatg 179  Q
    ||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||       ||||||||| |||||||||||||||| |||||||||||    
T  40541906 gaaatgctgcaattaactaggggcagaatccttgtgaaattgcatgaatctctggaaaaaa-gcaatttgctggtgcttttgtgtggaacagaatcaatg 40542004  T
Q  180 gcaaatggagtactagcaaattgcaatgtcagggctttagctcctgacacatttgtgtgggacactcatgtcataacccctctaataactcatggcaaca 279  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  40542005 gcaaatgcagtactagcaaattgcaatgtcagggctttagctcctgacacatttgtgtgggacactcatgtcagaacccctctaataactcttggcaaca 40542104  T
Q  280 accctggcagagttcctgcaaattgtctgactcaacagtttacttttctgacgcagtgtcacatgtcaaatcatttgcag-ctgacccaaaacatgatag 378  Q
    ||||||  ||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||     ||||| ||    
T  40542105 accctgatagagttcctgcaaattgtctgactcaacagtttgcttttctgatgcactgtcacatgtcaaatcatttgcagtctgacc-----catgacag 40542199  T
Q  379 gagccatgcgaggggtatacccctgggtattgcgtaataattaa 422  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  40542200 gagccatgcgaggggtatacccctgggaattgcgtaataattaa 40542243  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 570 - 638
Target Start/End: Original strand, 40542388 - 40542456
Alignment:
Q  570 tcattattttaaaatcattcaaaataatttaagtctaacagtaatgaaattaaaattgtacagaataat 638  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40542388 tcattattttaaaatcattcaaaataatttaagtctaacagtaatgaaattaaaattgtacggaataat 40542456  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 5010829 - 5010879
Alignment:
Q  12 atataaaattttgttttttctttactatgtcatattcttaaacttgatccc 62  Q
    |||||||| ||||||||||||||||||||| ||| ||||||| ||| ||||    
T  5010829 atataaaaatttgttttttctttactatgttatactcttaaatttggtccc 5010879  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 70 - 316
Target Start/End: Original strand, 6658920 - 6659167
Alignment:
Q  70 ttcactacaagaaatgctgcagttaaccaggggcagaatccttgtgaaattgtatgaatctctggnnnnnnngcaatttgccggtgcttttgtgtggagc 169  Q
    ||||||||||||||| ||||| ||| |||||||  || |||||||||||||| | ||||| ||||       || ||||||| | ||||||||| ||||     
T  6658920 ttcactacaagaaatcctgcaattagccaggggtggattccttgtgaaattgcaagaatccctgggaaaaa-gccatttgccagggcttttgtgaggagt 6659018  T
Q  170 agaatcaatggcaaatggagtactagcaaattgcaatgtcagggctttagctcctgacacatttgtgtggg--acactcatgtcataacccctctaataa 267  Q
     |||||| |||||||||   | |||||||||||| ||| ||||||||| ||||||| || || || |||||  |||||| ||||  ||||||||| ||||    
T  6659019 tgaatcagtggcaaatgcgctcctagcaaattgctatgccagggcttttgctcctggcaaatctgcgtgggacacactcctgtctgaacccctcttataa 6659118  T
Q  268 ctcatggcaacaaccctggcagagttcctgcaaattgtctgactcaaca 316  Q
    ||| |||||| | ||||||||| | ||   | |||||||||||||||||    
T  6659119 ctcctggcaaaacccctggcagggctctgactaattgtctgactcaaca 6659167  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 277
Target Start/End: Complemental strand, 3796458 - 3796252
Alignment:
Q  72 cactacaagaaatgctgcagttaaccaggggcagaatccttgtgaaattgtatgaatctctggnnnnnnngcaatttgccggtgcttttgtgtggagcag 171  Q
    ||||||||||||| ||||| ||| ||| |||  || |||||||||||||| | ||||| ||||       || ||||||| | ||||||||| ||||  |    
T  3796458 cactacaagaaatcctgcaattagccacgggtggattccttgtgaaattgcaagaatccctgggaaaaa-gccatttgccagggcttttgtgaggagttg 3796360  T
Q  172 aatcaatggcaaatggagtactagcaaattgcaatgtcagggctttagctcctgacacatttgtgtgggac--actcatgtcataacccctctaataact 269  Q
    ||||| |||||||||   | |||||||||||| ||| ||||||||| ||||||| || || || |||||||  |||| ||||  ||||||||| ||||||    
T  3796359 aatcagtggcaaatgcgctcctagcaaattgctatgccagggcttttgctcctggcaaatctgcgtgggacaaactcctgtctgaacccctcttataact 3796260  T
Q  270 catggcaa 277  Q
    | ||||||    
T  3796259 cctggcaa 3796252  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 598 - 638
Target Start/End: Original strand, 7780084 - 7780124
Alignment:
Q  598 ttaagtctaacagtaatgaaattaaaattgtacagaataat 638  Q
    ||||||||||||||||||||||||||||| ||| |||||||    
T  7780084 ttaagtctaacagtaatgaaattaaaattatacggaataat 7780124  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 11783205 - 11783148
Alignment:
Q  5 tatatgcatataaaattttgttttttctttactatgtcatattcttaaacttgatccc 62  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||||| ||| ||||    
T  11783205 tatatgcatataaaaatttggtttttctttactatgttatattcttaaatttggtccc 11783148  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 11500880 - 11500926
Alignment:
Q  7 tatgcatataaaattttgttttttctttactatgtcatattcttaaa 53  Q
    ||||||||||||||||| |||||||||||||| || ||| |||||||    
T  11500880 tatgcatataaaattttattttttctttactaagttatactcttaaa 11500926  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 32323814 - 32323862
Alignment:
Q  7 tatgcatataaaattttgttttttctttactatgtcatattcttaaact 55  Q
    ||||| ||||||| ||||| ||||||||||||||| |||||||||||||    
T  32323814 tatgcttataaaaatttgtgttttctttactatgttatattcttaaact 32323862  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 29608406 - 29608360
Alignment:
Q  7 tatgcatataaaattttgttttttctttactatgtcatattcttaaa 53  Q
    ||||||||||||| |||||||||||||||||| || ||| |||||||    
T  29608406 tatgcatataaaaatttgttttttctttactaagttatactcttaaa 29608360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 28113117 - 28113165
Alignment:
Q  7 tatgcatataaaattttgttttttctttactatgtcatattcttaaact 55  Q
    ||||||||||||| |||||||||||||||||| || ||| |||||||||    
T  28113117 tatgcatataaaaatttgttttttctttactaagttatactcttaaact 28113165  T

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