View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15846_low_3 (Length: 549)
Name: NF15846_low_3
Description: NF15846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15846_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 33178 - 33346
Alignment:
| Q |
1 |
aaaaacaattcaaaagcacatgtataaacttccacgaagccaaggtatgaaaaagaggtatatagcgcgagaaggtaatataaaatatctacaaacccag |
100 |
Q |
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| T |
33178 |
aaaaacaattcaaaagcacatgtagaaacttccacgaagccaaggtatgaaaaagaggtatatagcacgagaaagtaatataaaatatctacaaacccag |
33277 |
T |
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| Q |
101 |
acagaaaatagacattagataataaatagaattggaaaagaatttggtgtattgcaatatatttttaag |
169 |
Q |
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| T |
33278 |
acagaaaatagacattagattataaatagaattggaaaagcatttggtgtattgcaatatatttttaag |
33346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 236 - 377
Target Start/End: Original strand, 33413 - 33554
Alignment:
| Q |
236 |
gcattcaaacgaaaacaatatattgaaataaatcacgtgaaccaagacatgcactatttgtttctattaacttgatctagtgtattaaaacttaagtata |
335 |
Q |
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| T |
33413 |
gcattcaaacgaaaacaaaatattgaaataaatcacgtgaatcaagacattcactatttgtttctattaacttgatttagtgtattaaaacttaagtata |
33512 |
T |
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| Q |
336 |
ttaagttaaaatatgcaattgctaacttggtaataatattta |
377 |
Q |
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| T |
33513 |
ttaagttaaaatatgcaattgctaacttggtaataatattta |
33554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 33964 - 34063
Alignment:
| Q |
390 |
catatataatgataatataaatgaatgcctagtaaaagtcacttgtcaattgagttaaaaacaattcacgtttaaaaatgaacacttgagttaattatgt |
489 |
Q |
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| T |
33964 |
catatataatgataatataaatgaatgcgtagtaaaagtcacttgtcaattgagttaaaaacaattcacgtttaaaaatgaacacttgagttaattatgt |
34063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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