View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15846_low_5 (Length: 435)

Name: NF15846_low_5
Description: NF15846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15846_low_5
NF15846_low_5
[»] chr6 (4 HSPs)
chr6 (16-419)||(14533577-14533978)
chr6 (16-146)||(14529499-14529629)
chr6 (26-104)||(14523695-14523773)
chr6 (192-235)||(6719830-6719873)
[»] chr8 (4 HSPs)
chr8 (151-299)||(24887989-24888140)
chr8 (151-299)||(25430990-25431141)
chr8 (150-272)||(27084263-27084388)
chr8 (320-353)||(25430942-25430975)
[»] chr7 (12 HSPs)
chr7 (150-295)||(31642806-31642952)
chr7 (149-298)||(19362613-19362765)
chr7 (153-299)||(12640304-12640453)
chr7 (228-301)||(44598623-44598696)
chr7 (148-299)||(44629419-44629573)
chr7 (192-299)||(26074973-26075080)
chr7 (192-299)||(26098760-26098867)
chr7 (148-235)||(40954849-40954939)
chr7 (150-235)||(12467574-12467662)
chr7 (319-353)||(31642754-31642788)
chr7 (319-353)||(44598579-44598613)
chr7 (194-235)||(21267807-21267848)
[»] chr1 (6 HSPs)
chr1 (162-299)||(52453689-52453829)
chr1 (152-297)||(28702233-28702380)
chr1 (151-297)||(171086-171234)
chr1 (195-255)||(4808504-4808564)
chr1 (151-273)||(23826145-23826270)
chr1 (150-217)||(14876784-14876854)
[»] chr3 (8 HSPs)
chr3 (150-292)||(29438468-29438613)
chr3 (149-291)||(43615897-43616041)
chr3 (11-106)||(37329340-37329435)
chr3 (16-98)||(23347327-23347409)
chr3 (16-106)||(37340610-37340700)
chr3 (199-291)||(788838-788931)
chr3 (150-265)||(47648996-47649114)
chr3 (319-353)||(29438417-29438451)
[»] chr4 (2 HSPs)
chr4 (153-299)||(46851865-46852012)
chr4 (150-217)||(50070177-50070247)
[»] scaffold0022 (1 HSPs)
scaffold0022 (16-95)||(162396-162475)
[»] chr2 (4 HSPs)
chr2 (158-235)||(38972223-38972303)
chr2 (249-297)||(17623267-17623315)
chr2 (148-231)||(9615680-9615767)
chr2 (209-299)||(14735500-14735590)
[»] chr5 (3 HSPs)
chr5 (150-222)||(16717189-16717264)
chr5 (150-222)||(19645442-19645517)
chr5 (195-299)||(32633038-32633142)


Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 14533978 - 14533577
Alignment:
Q  16 ggatttgtttacagaatttgcagatcatcaagtgcgactgcacaagaagcttgcatttctggagggaagtgtatctgaaatctgaaactagttctttcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14533978 ggatttgtttacagaatttgcagatcatcaagtgcgactgcacaagaagcttgcatttctggagggaagtgtatctgaaatctgaaactagttctttcaa 14533879  T
Q  116 tgagtttgtttaatagttatagactagtaaagaacagtggcagatcttgagttaatttgttgaggatgccatactttggaatatatattaactggtttca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14533878 tgagtttgtttaatagttatagactagtaaagaacagtggcagatcttgagttaatttgttgaggatgccatactttggaatatatattaactggtttca 14533779  T
Q  216 agtattatcaataattaatagctggacaagtggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccctcaaaacgnnnnnnnnnnnnnn 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||                  
T  14533778 agtattatcaataattaatagctggacaagtggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccctcgaaacgtttttttttttttt 14533679  T
Q  316 nnaaaatacaatatgcaacaatagaagattaaacaagtnnnnnnnngatgac-aaagtgttaaaccagtgaccttgagcaaattcatggaactccttgtc 414  Q
       |||||||||||||||||||||||||||||||||||        |||||| |||||||| |||||||||||||||||||||||| |||||||||||||    
T  14533678 ---aaatacaatatgcaacaatagaagattaaacaagtaaaaaaaagatgacaaaagtgttgaaccagtgaccttgagcaaattcacggaactccttgtc 14533582  T
Q  415 cattg 419  Q
    |||||    
T  14533581 cattg 14533577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 14529629 - 14529499
Alignment:
Q  16 ggatttgtttacagaatttgcagatcatcaagtgcgactgcacaagaagcttgcatttctggagggaagtgtatctgaaatctgaaactagttctttcaa 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14529629 ggatttatttacagaatttgcagatcatcaagtgcgactgcacaagaagcttgcatttctggagggaagtgtatctgaaatctgaaactagttctttcaa 14529530  T
Q  116 tgagtttgtttaatagttatagactagtaaa 146  Q
    ||||||||||||||||||||||||| |||||    
T  14529529 tgagtttgtttaatagttatagactggtaaa 14529499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 14523773 - 14523695
Alignment:
Q  26 acagaatttgcagatcatcaagtgcgactgcacaagaagcttgcatttctggagggaagtgtatctgaaatctgaaact 104  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  14523773 acagaatttgcggatcatcaagtgcgactgcagaagaagcttgcatttctggaggaaagtgtatctgaaatctgaaact 14523695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 6719830 - 6719873
Alignment:
Q  192 tggaatatatattaactggtttcaagtattatcaataattaata 235  Q
    ||||||||||||||| |||||||||||  |||||||||||||||    
T  6719830 tggaatatatattaaatggtttcaagttatatcaataattaata 6719873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 151 - 299
Target Start/End: Original strand, 24887989 - 24888140
Alignment:
Q  151 agtggcagatcttgagttaatttgttgaggatgccatacttt---ggaatatatattaactggtttcaagtattatcaataattaatagctggacaagtg 247  Q
    |||||| |||||||||||||||||||| || ||||| | |||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24887989 agtggcggatcttgagttaatttgttgggggtgccaaaattttatggaatatatattaactggtttcaagtattatcaataattaatagctggataagtg 24888088  T
Q  248 gtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccctcaaaa 299  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  24888089 gtataaaatgttttaaaggagcaagaggaagtgggtttgaatcccctcaaaa 24888140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 299
Target Start/End: Complemental strand, 25431141 - 25430990
Alignment:
Q  151 agtggcagatcttgagttaatttgttgaggatgcc-atactt--tggaatatatattaactggtttcaagtattatcaataattaatagctggacaagtg 247  Q
    |||||| ||| |||||||||||||| | || |||| ||| ||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  25431141 agtggcggattttgagttaatttgtcgggggtgccaatattttatggaatatatattaactggtttcaagtgttatcaataattaatagctggacaaatg 25431042  T
Q  248 gtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccctcaaaa 299  Q
    ||||||||| |||||||||||||||| ||||| ||||  |||||||| ||||    
T  25431041 gtataaaatattttaaaggagcaagaggaagtgggttcaaatccccttaaaa 25430990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 27084263 - 27084388
Alignment:
Q  150 cagtggcagatcttgagttaatttgttgaggatgccatacttt---ggaatatatattaactggtttcaagtattatcaataattaatagctggacaagt 246  Q
    |||||||  ||||||||||||||||||| || ||||| |||||   ||||||||||| || |||||| |||||||| ||||||||||||   || ||||     
T  27084263 cagtggcgaatcttgagttaatttgttgggggtgccaaacttttatggaatatatatcaaatggttttaagtattaacaataattaataataggccaagc 27084362  T
Q  247 ggtataaaatgttttaaaggagcaag 272  Q
    | | | |||||||| |||||||||||    
T  27084363 gatgtcaaatgtttgaaaggagcaag 27084388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 25430975 - 25430942
Alignment:
Q  320 aatacaatatgcaacaatagaagattaaacaagt 353  Q
    |||||||||||||| |||||||||||||||||||    
T  25430975 aatacaatatgcaataatagaagattaaacaagt 25430942  T

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Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 150 - 295
Target Start/End: Complemental strand, 31642952 - 31642806
Alignment:
Q  150 cagtggcagatcttgagttaatttgttgaggatgccatacttt---ggaatatatattaactggtttcaagtattatcaataattaatagctggacaagt 246  Q
    |||||||||||||||||||||||||||| |||||||| |||||   ||||||||||||||||||||||||||||||| |||||||||||||||  |||||    
T  31642952 cagtggcagatcttgagttaatttgttggggatgccaaacttttatggaatatatattaactggtttcaagtattattaataattaatagctgaccaagt 31642853  T
Q  247 ggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccctc 295  Q
    |||||||||||||||||| |||||||  ||||| |||||||||||||||    
T  31642852 ggtataaaatgttttaaaagagcaag--gaagtgggtttgaatcccctc 31642806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 149 - 298
Target Start/End: Complemental strand, 19362765 - 19362613
Alignment:
Q  149 acagtggcagatcttgagttaatttgttgaggatgccatacttt---ggaatatatattaactggtttcaagtattatcaataattaatagctggacaag 245  Q
    |||||||| |||||||||||| ||||||| || ||||| |||||   ||||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  19362765 acagtggcggatcttgagttattttgttgggggtgccaaacttttatggaatatatattaactggtttcaagtattattaataattaatggctggccaag 19362666  T
Q  246 tggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccctcaaa 298  Q
    |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  19362665 tggtataaaatgttttaaaggagcaagaggaagtgggtttgattcccctcaaa 19362613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 12640304 - 12640453
Alignment:
Q  153 tggcagatcttgagttaatttgttgaggatgccatacttt---ggaatatatattaactggtttcaagtattatcaataattaatagctggacaagtggt 249  Q
    |||| |||||||||||||||||| | || ||||| |||||   |||||||||||||| |||||| | | |||| |||||||||||| |||  ||||||||    
T  12640304 tggcggatcttgagttaatttgtcgggggtgccaaacttttatggaatatatattaaatggttttacgcattaacaataattaataactgatcaagtggt 12640403  T
Q  250 ataaaatgttttaaaggagcaagatgaagtcggtttgaatcccctcaaaa 299  Q
    |||||||||||||||||||||||  || ||  ||||||||||||||||||    
T  12640404 ataaaatgttttaaaggagcaagtggatgttagtttgaatcccctcaaaa 12640453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 44598696 - 44598623
Alignment:
Q  228 aattaatagctggacaagtggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccctcaaaacg 301  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||| |||||||||| |||||    
T  44598696 aattaatagctggccaagtggtataaaatgtgttaaaggagcaagaggaagtgggttcgaatcccctcgaaacg 44598623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 299
Target Start/End: Complemental strand, 44629573 - 44629419
Alignment:
Q  148 aacagtggcagatcttgagttaatttgttgaggatgccatactt---tggaatatatattaactggtttcaagtattatcaataattaatagctggacaa 244  Q
    ||||||||| ||||||||||| |||||| | || ||||| ||||   |||||||||||||||  ||||||||| |    ||||||||| || |||  | |    
T  44629573 aacagtggcggatcttgagttgatttgtagggggtgccaaacttctatggaatatatattaaacggtttcaagaagatacaataattagtaactgaccta 44629474  T
Q  245 gtggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccctcaaaa 299  Q
    |||||||||| ||||| ||| || ||||| || || |||||||||||||||||||    
T  44629473 gtggtataaattgtttgaaaagaacaagaggatgtgggtttgaatcccctcaaaa 44629419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 26074973 - 26075080
Alignment:
Q  192 tggaatatatattaactggtttcaagtattatcaataattaatagctggacaagtggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcc 291  Q
    ||||||||||||||| |||||||||| | ||||||||||| ||| | || | |||||||||||   |||||||||||||||| |  || ||||||||||     
T  26074973 tggaatatatattaaatggtttcaagaagtatcaataatttataaccggcctagtggtataaatccttttaaaggagcaagagggtgtgggtttgaatca 26075072  T
Q  292 cctcaaaa 299  Q
    | ||||||    
T  26075073 cttcaaaa 26075080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 26098760 - 26098867
Alignment:
Q  192 tggaatatatattaactggtttcaagtattatcaataattaatagctggacaagtggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcc 291  Q
    ||||||||||||||| |||||||||| | ||||||||||| ||| | || | |||||||||||   |||||||||||||||| |  || ||||||||||     
T  26098760 tggaatatatattaaatggtttcaagaagtatcaataatttataaccggcctagtggtataaatccttttaaaggagcaagagggtgtgggtttgaatca 26098859  T
Q  292 cctcaaaa 299  Q
    | ||||||    
T  26098860 cttcaaaa 26098867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 40954849 - 40954939
Alignment:
Q  148 aacagtggcagatcttgagttaatttgttgaggatgccatactt---tggaatatatattaactggtttcaagtattatcaataattaata 235  Q
    ||||||||| ||||||||||||| |||||| || ||||| || |   || |||||||||||| |||||||||| | ||||||| |||||||    
T  40954849 aacagtggcggatcttgagttaaattgttgggggtgccaaacatatatgaaatatatattaaatggtttcaagaaatatcaattattaata 40954939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 12467574 - 12467662
Alignment:
Q  150 cagtggcagatcttgagttaatttgttgaggatgccatactt---tggaatatatattaactggtttcaagtattatcaataattaata 235  Q
    ||||||| ||||||||||||| |||||| || ||||| || |   ||||||||||||||| |||||||||  | ||||||| |||||||    
T  12467574 cagtggcggatcttgagttaaattgttgggggtgccaaacatatatggaatatatattaaatggtttcaaaaaatatcaattattaata 12467662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 31642788 - 31642754
Alignment:
Q  319 aaatacaatatgcaacaatagaagattaaacaagt 353  Q
    ||||||||||||||| |||||||||||||||||||    
T  31642788 aaatacaatatgcaataatagaagattaaacaagt 31642754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 44598613 - 44598579
Alignment:
Q  319 aaatacaatatgcaacaatagaagattaaacaagt 353  Q
    ||||||||||||||| |||||||||||||||||||    
T  44598613 aaatacaatatgcaataatagaagattaaacaagt 44598579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 21267848 - 21267807
Alignment:
Q  194 gaatatatattaactggtttcaagtattatcaataattaata 235  Q
    ||||||||||||| |||||||||||  |||||||||||||||    
T  21267848 gaatatatattaaatggtttcaagttatatcaataattaata 21267807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 52453689 - 52453829
Alignment:
Q  162 ttgagttaatttgttgaggatgccatacttt---ggaatatatattaactggtttcaagtattatcaataattaatagctggacaagtggtataaaatgt 258  Q
    |||||||||||||||| || ||||| |||||   ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  52453689 ttgagttaatttgttgggggtgccaaacttttatggaatatatattaactggtttaaagtattatcaataattaattgctggccaagtggtataaaatgt 52453788  T
Q  259 tttaaaggagcaagatgaagtcggtttgaatcccctcaaaa 299  Q
    |||||| || ||||| ||||| |||||||||||||||||||    
T  52453789 tttaaaagaacaagaggaagtgggtttgaatcccctcaaaa 52453829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 152 - 297
Target Start/End: Original strand, 28702233 - 28702380
Alignment:
Q  152 gtggcagatcttgagttaatttgttgaggatgccatacttt---ggaatatatattaactggtttcaagtattatcaataattaatagctggacaagtgg 248  Q
    ||||| |||||||||||||||||||| || ||||| |||||   |||||||||||| | ||||||||||||||||||||||||||||| ||| |||||||    
T  28702233 gtggcggatcttgagttaatttgttgggggtgccaaacttttatggaatatatatttaatggtttcaagtattatcaataattaatagttggccaagtgg 28702332  T
Q  249 tataaaatgttttaaaggagcaagatgaagtcggtttgaatcccctcaa 297  Q
    | ||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  28702333 t-taaaatgttttgaaggagcaagaggaagtgggtttgaatcccctcaa 28702380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 297
Target Start/End: Complemental strand, 171234 - 171086
Alignment:
Q  151 agtggcagatcttgagttaatttgttgaggatgccatacttt---ggaatatatattaactggtttcaagtattatcaataattaatagctggacaagtg 247  Q
    |||||| |||||||||||||||||||| |||||||| || ||   |||||||||||||| | ||||||| ||||| ||||||||||| | ||  ||||||    
T  171234 agtggcggatcttgagttaatttgttg-ggatgccaaacctttatggaatatatattaaattgtttcaaatattaacaataattaatggttgcccaagtg 171136  T
Q  248 gtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccctcaa 297  Q
    |||||||||||||||||||||||| |  || |  ||||||||||||||||    
T  171135 gtataaaatgttttaaaggagcaacaacaattgagtttgaatcccctcaa 171086  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 4808564 - 4808504
Alignment:
Q  195 aatatatattaactggtttcaagtattatcaataattaatagctggacaagtggtataaaa 255  Q
    |||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||    
T  4808564 aatatatattaaatggtttcaagtattatcaataattaatagctgatcaagtggtataaaa 4808504  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 151 - 273
Target Start/End: Complemental strand, 23826270 - 23826145
Alignment:
Q  151 agtggcagatcttgagttaatttgttgaggatgccatactt---tggaatatatattaactggtttcaagtattatcaataattaatagctggacaagtg 247  Q
    |||||||||||||||||||| || ||| || ||||| ||||   |||||||||||||||  | ||||||| | || |||||||||||| |||| | ||||    
T  23826270 agtggcagatcttgagttaacttattgtgggtgccaaacttctatggaatatatattaaacgatttcaagaagtaacaataattaataactggtctagtg 23826171  T
Q  248 gtataaaatgttttaaaggagcaaga 273  Q
    ||||||| | ||| ||||||||||||    
T  23826170 gtataaattatttgaaaggagcaaga 23826145  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 14876784 - 14876854
Alignment:
Q  150 cagtggcagatcttgagttaatttgttgaggatgccatactt---tggaatatatattaactggtttcaag 217  Q
    ||||||| |||||||| ||||||||||| || ||||| ||||   || |||||||||||| ||||||||||    
T  14876784 cagtggcggatcttgacttaatttgttgggggtgccaaacttctatgtaatatatattaaatggtttcaag 14876854  T

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Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 150 - 292
Target Start/End: Complemental strand, 29438613 - 29438468
Alignment:
Q  150 cagtggcagatcttgagttaatttgttgaggatgccatacttt---ggaatatatattaactggtttcaagtattatcaataattaatagctggacaagt 246  Q
    |||||||  ||||||||||||||||||| |  || || |||||   |||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  29438613 cagtggcgaatcttgagttaatttgttgggagtgtcaaacttttatggaatatatattaactggtttcaagtattatcaataattaatagttggccaagt 29438514  T
Q  247 ggtataaaatgttttaaaggagcaagatgaagtcggtttgaatccc 292  Q
     |||||||||||||||||||||||||| ||||| ||||||||||||    
T  29438513 tgtataaaatgttttaaaggagcaagaggaagtgggtttgaatccc 29438468  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 149 - 291
Target Start/End: Complemental strand, 43616041 - 43615897
Alignment:
Q  149 acagtggcagatcttgagttaatttgttgaggatgccatacttt---ggaatatatattaactggtttcaagtattatcaataattaatagctggacaag 245  Q
    |||||||| |||||||||||||||||||| || || || |||||   |||||||||||||||| ||| |||||||||||||||||||||||||||  |||    
T  43616041 acagtggcggatcttgagttaatttgttgggggtgtcaaacttttatggaatatatattaactagtt-caagtattatcaataattaatagctggctaag 43615943  T
Q  246 tggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcc 291  Q
    |||||||||||||||||||||||||||| ||||| | |||||||||    
T  43615942 tggtataaaatgttttaaaggagcaagaggaagtggttttgaatcc 43615897  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 37329340 - 37329435
Alignment:
Q  11 atgaaggatttgtttacagaatttgcagatcatcaagtgcgactgcacaagaagcttgcatttctggagggaagtgtatctgaaatctgaaactag 106  Q
    |||| |||||||| | | |||||||| ||||| |||| ||| |||||||||||||||||||||||||| ||||||||   ||||||||||||||||    
T  37329340 atgagggatttgtattcggaatttgctgatcaccaagagcggctgcacaagaagcttgcatttctggaaggaagtgttaatgaaatctgaaactag 37329435  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 23347327 - 23347409
Alignment:
Q  16 ggatttgtttacagaatttgcagatcatcaagtgcgactgcacaagaagcttgcatttctggagggaagtgtatctgaaatct 98  Q
    ||||||||||||||||||| | |||||||||||||| |||||||| |  ||||||||| ||||||| ||| ||||||||||||    
T  23347327 ggatttgtttacagaattttctgatcatcaagtgcggctgcacaacattcttgcatttttggaggggagtatatctgaaatct 23347409  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 37340610 - 37340700
Alignment:
Q  16 ggatttgtttacagaatttgcagatcatcaagtgcgactgcacaagaagcttgcatttctggagggaagtgtatctgaaatctgaaactag 106  Q
    |||||||||| | |||||||| ||||| |||||||| |||||||||||||||||||||||||| | |||| |   ||||||||||||||||    
T  37340610 ggatttgttttcggaatttgctgatcaccaagtgcggctgcacaagaagcttgcatttctggaagcaagtattcatgaaatctgaaactag 37340700  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 788838 - 788931
Alignment:
Q  199 tatattaactggtttcaagtattatcaataattaatagctggacaagtggtataaaatgt-tttaaaggagcaagatgaagtcggtttgaatcc 291  Q
    |||||||| | ||||||| |||||||||||||||||| ||||  |||||||||| |||||  |||||||||||||| || || |||| ||||||    
T  788838 tatattaaattgtttcaaatattatcaataattaataactggttaagtggtatagaatgtccttaaaggagcaagaggatgtgggttcgaatcc 788931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 265
Target Start/End: Original strand, 47648996 - 47649114
Alignment:
Q  150 cagtggcagatcttgagttaatttgttgaggatgccatactt---tggaatatatattaactggtttcaagtattatcaataattaatagctggacaagt 246  Q
    ||||||| ||||||||||||| || ||| || ||||| | ||   ||||||||||||||| |||||||||||  |||||||||||||||  ||| | |||    
T  47648996 cagtggcggatcttgagttaaattcttgggggtgccaaatttctatggaatatatattaaatggtttcaagttatatcaataattaataattggcctagt 47649095  T
Q  247 ggtataaaatgttttaaag 265  Q
    ||||| || ||||| ||||    
T  47649096 ggtatgaattgtttgaaag 47649114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 29438451 - 29438417
Alignment:
Q  319 aaatacaatatgcaacaatagaagattaaacaagt 353  Q
    ||||||||||||||| |||||||||||||||||||    
T  29438451 aaatacaatatgcaataatagaagattaaacaagt 29438417  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 46851865 - 46852012
Alignment:
Q  153 tggcagatcttgagttaatttgttgaggatgccatactttg--gaatatatattaactggtttcaagtattatcaataattaatagctggacaagtggta 250  Q
    |||| |||||||||||||||||||| || ||||| |||||   ||| ||||||||  |||||| ||||||||||||||||||||| | || |||||||||    
T  46851865 tggcggatcttgagttaatttgttgggggtgccaaacttttatgaa-atatattatatggttttaagtattatcaataattaataaccggtcaagtggta 46851963  T
Q  251 taaaatgttttaaaggagcaagatgaagtcggtttgaatcccctcaaaa 299  Q
    |||||| ||||||| |||||||  || || ||||| |||||||||||||    
T  46851964 taaaatattttaaatgagcaagtggatgttggtttaaatcccctcaaaa 46852012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 50070247 - 50070177
Alignment:
Q  150 cagtggcagatcttgagttaatttgttgaggatgccatactt---tggaatatatattaactggtttcaag 217  Q
    ||||||| |||||||| ||||||||||| || ||||| ||||   || |||||||||||| ||||||||||    
T  50070247 cagtggcggatcttgacttaatttgttgggggtgccaaacttctatgtaatatatattaaatggtttcaag 50070177  T

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Target: scaffold0022 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 162475 - 162396
Alignment:
Q  16 ggatttgtttacagaatttgcagatcatcaagtgcgactgcacaagaagcttgcatttctggagggaagtgtatctgaaa 95  Q
    |||||||||||| |||||||  |||||||||||||| |||||||||| |||||||||| ||||||||||| |||||||||    
T  162475 ggatttgtttacggaatttgttgatcatcaagtgcggctgcacaagatgcttgcatttttggagggaagtatatctgaaa 162396  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 38972223 - 38972303
Alignment:
Q  158 gatcttgagttaatttgttgaggatgccatactt---tggaatatatattaactggtttcaagtattatcaataattaata 235  Q
    ||||||||||||| |||||| |||||||| || |   ||||||||||||||| |||||||||| | ||||||| |||||||    
T  38972223 gatcttgagttaaattgttggggatgccaaacatatatggaatatatattaaatggtttcaagaaatatcaattattaata 38972303  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 17623267 - 17623315
Alignment:
Q  249 tataaaatgttttaaaggagcaagatgaagtcggtttgaatcccctcaa 297  Q
    |||||||||||||||||||||||||  |||| |||| ||||||||||||    
T  17623267 tataaaatgttttaaaggagcaagagtaagtgggttcgaatcccctcaa 17623315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 9615680 - 9615767
Alignment:
Q  148 aacagtggcagatcttgagttaatttgttgaggatgcca----tactttggaatatatattaactggtttcaagtattatcaataatt 231  Q
    ||||||||| ||||||||||||| || ||| || |||||    | || ||||||||||||||| |||||||||||  |||||||||||    
T  9615680 aacagtggcggatcttgagttaaattcttgggggtgccaaaatttctatggaatatatattaaatggtttcaagttatatcaataatt 9615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 14735500 - 14735590
Alignment:
Q  209 ggtttcaagtattatcaataattaatagctggacaagtggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccctcaaaa 299  Q
    ||||||||| | || |||||||||||| |||  | |||| |||||| |||||||||||||||||| || || | || ||||||||| ||||    
T  14735500 ggtttcaagaaataacaataattaataactgacctagtgatataaattgttttaaaggagcaagaagatgtggattcgaatccccttaaaa 14735590  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 16717264 - 16717189
Alignment:
Q  150 cagtggcagatcttgagttaatttgttgaggatgccatactt---tggaatatatattaactggtttcaagtatta 222  Q
    ||||||| |||||||||||||||||||| || ||||| ||||   ||||||||||||||| |||| |||| |||||    
T  16717264 cagtggcggatcttgagttaatttgttgggggtgccaaacttttatggaatatatattaaatggtatcaaatatta 16717189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 19645517 - 19645442
Alignment:
Q  150 cagtggcagatcttgagttaatttgttgaggatgccatactt---tggaatatatattaactggtttcaagtatta 222  Q
    ||||||| |||||||||||||||||||| || ||||| ||||   ||||||||||||||| |||| |||| |||||    
T  19645517 cagtggcggatcttgagttaatttgttgggggtgccaaacttttatggaatatatattaaatggtatcaaatatta 19645442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 299
Target Start/End: Original strand, 32633038 - 32633142
Alignment:
Q  195 aatatatattaactggtttcaagtattatcaataattaatagctggacaagtggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccct 294  Q
    ||||||||||||  ||||||||| | || |||||||||||| | || | ||||||||||| ||||| |||| |||||||  | || |||| |||||||||    
T  32633038 aatatatattaaacggtttcaagaagtaacaataattaataaccggtctagtggtataaattgtttgaaagaagcaagagaatgtgggttcgaatcccct 32633137  T
Q  295 caaaa 299  Q
     ||||    
T  32633138 aaaaa 32633142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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