View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15846_low_7 (Length: 383)
Name: NF15846_low_7
Description: NF15846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15846_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 124 - 380
Target Start/End: Complemental strand, 4946434 - 4946184
Alignment:
| Q |
124 |
ttaatattccaaattgttgtaagatgagaaataaagagatgtaagtgatttatatagagtcacaatacacgcataatactcgggtgatgacttaaattat |
223 |
Q |
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| T |
4946434 |
ttaatattccaaattgttgtaagatgagaaataaagagatgtaagtgatttata--gagtcacaatacacgcataatactcgggtgatgacttaaattat |
4946337 |
T |
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| Q |
224 |
acacgtgtgaaatggattaatattgtttataatgtggctgatcccttttcactcgttaaatttagtcaaactatgggttctatggtcatcttatannnnn |
323 |
Q |
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| T |
4946336 |
acacgtgtgaaatggattaatattgtttataatgcggctgatcccttttcactcgttaaatttagtcaaactatgggttctatagtcatcttata----c |
4946241 |
T |
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| Q |
324 |
nnnnnnnttgcaacatcattttagcacgtccttttgagaatttaagctttatatttt |
380 |
Q |
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| T |
4946240 |
tctctctttgcaacatcattttagcacgtccttttgagaatttaagctttaaatttt |
4946184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 4946538 - 4946490
Alignment:
| Q |
19 |
aaagaaaaccctaaaagaaaaagcagattaagagttaaataggatacct |
67 |
Q |
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| T |
4946538 |
aaagaaaaccctaaaagaaaaagcagattaagagttaaataggatacct |
4946490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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