View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15847_high_2 (Length: 456)
Name: NF15847_high_2
Description: NF15847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15847_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Original strand, 38334260 - 38334691
Alignment:
| Q |
17 |
attattagtcaattttaaagcaaactcaaactatctccaccgcgactctgttgttttcgagcaaccctcaaattttaggtcgtgaattataaaatgaact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38334260 |
attattagtcaattttaaagcaaactcaaactatctccaccgcgactctgttgttttcgagcaaccctcaaattttaggtcgtgaattataaaatgaact |
38334359 |
T |
|
| Q |
117 |
atttgtacccggtgaaagaagagtatttggaaattgaagcaaccccgtcatcattgacatatgaaagaggaagtgatgagggatcaacggttgttattcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38334360 |
atttgtacccggtgaaagaagagtatttggaaattgaagcaaccccgtcatcattgacatatgaaagaggaagtgatgagggatcaacggttgttattcc |
38334459 |
T |
|
| Q |
217 |
acggccaatggagaggcttcatgaagtaggaccaccaccatttcttacaaagacatttgatgttgtggaggaccccacaacaagtcacatagtttcatgg |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38334460 |
acggccaatggaggggcttcatgaagtaggaccaccaccatttcttacaaagacatttgatgttgtggaggaccccacaacaagtcacatagtttcatgg |
38334559 |
T |
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| Q |
317 |
agcagaggtggtgctagctttgttgtttgggatccaaatgctttctccagagaccttcttcctagatacttcaaacacaacaatttctcaagttttgtta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38334560 |
agcagaggtggtgctagctttgttgtttgggatccaaatgctttctccagagaccttcttcctagatacttcaaacacaacaatttctcaagttttgtta |
38334659 |
T |
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| Q |
417 |
gacaactcaacacctatgtaagtattcatctc |
448 |
Q |
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| T |
38334660 |
gacaactcaacacctatgtaagtattcttctc |
38334691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 305 - 440
Target Start/End: Complemental strand, 31664928 - 31664793
Alignment:
| Q |
305 |
atagtttcatggagcagaggtggtgctagctttgttgtttgggatccaaatgctttctccagagaccttcttcctagatacttcaaacacaacaatttct |
404 |
Q |
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||||||||||||| ||| |||| | || ||||| ||||||||| || |||| ||||||| || ||||| ||||||||||||||||| ||||||| |
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| T |
31664928 |
atagtttcatggaacaggagtggcacaagttttgtggtttgggatacacatgccttctccaatcttctccttcccagatacttcaaacacaataatttct |
31664829 |
T |
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| Q |
405 |
caagttttgttagacaactcaacacctatgtaagta |
440 |
Q |
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| T |
31664828 |
caagctttgtcagacaactaaacacttatgtaagta |
31664793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 46489032 - 46488963
Alignment:
| Q |
371 |
cttcttcctagatacttcaaacacaacaatttctcaagttttgttagacaactcaacacctatgtaagta |
440 |
Q |
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| T |
46489032 |
cttctccctagattcttcaagcacaacaatttctccagttttgtcaggcaacttaatacctatgtgagta |
46488963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 26684625 - 26684587
Alignment:
| Q |
377 |
cctagatacttcaaacacaacaatttctcaagttttgtt |
415 |
Q |
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| T |
26684625 |
cctagacacttcaaacacaacaatttctccagttttgtt |
26684587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 449
Target Start/End: Complemental strand, 46927119 - 46927035
Alignment:
| Q |
365 |
agagaccttcttcctagatacttcaaacacaacaatttctcaagttttgttagacaactcaacacctatgtaagtattcatctct |
449 |
Q |
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|||||||| || |||| ||||||||||||||||| ||||| || || ||| |||||||||||||||||||||| | |||||||| |
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| T |
46927119 |
agagacctcctccctaactacttcaaacacaacaacttctctagcttcgttcgacaactcaacacctatgtaagcaatcatctct |
46927035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 48170773 - 48170830
Alignment:
| Q |
383 |
tacttcaaacacaacaatttctcaagttttgttagacaactcaacacctatgtaagta |
440 |
Q |
| |
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||||||||||||| |||||||| ||||| ||| |||||||||| ||||||||||||| |
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| T |
48170773 |
tacttcaaacacagtaatttctctagtttcgttcgacaactcaatacctatgtaagta |
48170830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 440
Target Start/End: Original strand, 32734717 - 32734772
Alignment:
| Q |
385 |
cttcaaacacaacaatttctcaagttttgttagacaactcaacacctatgtaagta |
440 |
Q |
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| T |
32734717 |
cttcaaacacaacaatttctctagctttgttcgtcaactcaacacttatgtaagta |
32734772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 439
Target Start/End: Original strand, 35502552 - 35502614
Alignment:
| Q |
377 |
cctagatacttcaaacacaacaatttctcaagttttgttagacaactcaacacctatgtaagt |
439 |
Q |
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|||| ||| ||||| |||||||||||||| |||||| || |||||||||| || ||||||||| |
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| T |
35502552 |
cctaaatatttcaagcacaacaatttctctagttttattcgacaactcaatacatatgtaagt |
35502614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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