View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15847_high_4 (Length: 314)
Name: NF15847_high_4
Description: NF15847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15847_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 35130490 - 35130208
Alignment:
| Q |
20 |
ggatgcacttatacatctccagtctctattatgatctagtttcatattgtgatgtgcagnnnnnnntcagagatagttgagtgttaggttaaagcactta |
119 |
Q |
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| T |
35130490 |
ggatgcacttatacatctccagtctctattatgatctagtttcatattgtgatgtgcagaaaaaaatcagagatagttgagtgttaggttaaagcactta |
35130391 |
T |
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| Q |
120 |
caaagtgcgtgctgagattaaattgacacaaaaattcaggaatatagaggacatcaataagctatatgtgagaatcaagattcacactccctatggccaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35130390 |
caaagtgcgtgctgagattaaattgacacaaaaattcaggaatatagaggacatcaataagctatatgtgagaatcaagattcacactccctatggccaa |
35130291 |
T |
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| Q |
220 |
aaccttgacttttttaatgttgggaagattaaacaagtctttatatggtttgagataagttctcctcaaccgtcactgtcctt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35130290 |
aaccttgacttttttaatgttgggaagattaaacaagtctttatatggtttgagataagttctcctcaaccgtcactgtcctt |
35130208 |
T |
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