View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15847_high_5 (Length: 283)

Name: NF15847_high_5
Description: NF15847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15847_high_5
NF15847_high_5
[»] chr3 (3 HSPs)
chr3 (1-272)||(38556003-38556281)
chr3 (194-272)||(2010623-2010700)
chr3 (207-260)||(32633940-32633993)
[»] chr7 (3 HSPs)
chr7 (192-272)||(47405094-47405174)
chr7 (221-262)||(28923808-28923849)
chr7 (192-265)||(26752127-26752199)
[»] chr4 (2 HSPs)
chr4 (192-272)||(47745267-47745347)
chr4 (194-272)||(22466377-22466455)
[»] chr2 (3 HSPs)
chr2 (192-272)||(36362998-36363078)
chr2 (207-272)||(28388722-28388787)
chr2 (207-257)||(42494531-42494581)
[»] chr1 (2 HSPs)
chr1 (192-262)||(41092666-41092736)
chr1 (192-262)||(41087925-41087995)
[»] chr8 (2 HSPs)
chr8 (207-265)||(38810127-38810185)
chr8 (222-263)||(6845560-6845601)
[»] chr5 (1 HSPs)
chr5 (207-265)||(5539085-5539143)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 38556003 - 38556281
Alignment:
Q  1 tttttaattgcacttcattttcttttgacatatactttggagtttggaggcataattaaatagaatgcattacgtataacttgtgagtaaaaatgcatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38556003 tttttaattgcacttcattttcttttgacatatactttggagtttggaggcataattaaatagaatgcattgcgtataacttgtgagtaaaaatgcatgc 38556102  T
Q  101 atatacactattggtattttaagtatgagcaaagtcttacttacattggatgaaaaatagatgttgagcacaataaaagtgaggagacta-------atg 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  38556103 atatacactattggtattttaagtatgagcaaagtcttacttacattggatgaaaaatagatgttgagcacaataaaagtgaggagactaatgccttatg 38556202  T
Q  194 gactcgtatatatgaccataccacatgaactttactatacattgactattcaacatatccagctcaacttgagtgttca 272  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38556203 gactcgtatagatgaccataccacatgaactttattatacattgactattcaacatatccagctcaacttgagtgttca 38556281  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 2010700 - 2010623
Alignment:
Q  194 gactcgtatatatgaccataccacatgaactttactatacattgactattcaacatatccagctcaacttgagtgttca 272  Q
    |||| ||||| | ||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  2010700 gactagtatagaggaccataccacatgaactttactatacatcgac-attcaacatatccagcttaacttgagtgttca 2010623  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 32633940 - 32633993
Alignment:
Q  207 gaccataccacatgaactttactatacattgactattcaacatatccagctcaa 260  Q
    ||||||||||  || |||||| ||||||||||||||||||||| |||| |||||    
T  32633940 gaccataccatgtggactttattatacattgactattcaacatgtccaactcaa 32633993  T

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Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 47405174 - 47405094
Alignment:
Q  192 tggactcgtatatatgaccataccacatgaactttactatacattgactattcaacatatccagctcaacttgagtgttca 272  Q
    |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47405174 tggactggtatagaggaccataccacatgaactttactatacattgactattcaacatatccagctcaacttgagtgttca 47405094  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 28923808 - 28923849
Alignment:
Q  221 aactttactatacattgactattcaacatatccagctcaact 262  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  28923808 aactttattatacattgactattcaacatatcaagctcaact 28923849  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 26752199 - 26752127
Alignment:
Q  192 tggactcgtatatatgaccataccacatgaactttactatacattgactattcaacatatccagctcaacttga 265  Q
    |||||| ||||| | ||||||||||| || ||||||||||||| |||||| ||||||| || |||||| |||||    
T  26752199 tggactggtatagaagaccataccacgtggactttactatacactgacta-tcaacatgtctagctcatcttga 26752127  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 47745347 - 47745267
Alignment:
Q  192 tggactcgtatatatgaccataccacatgaactttactatacattgactattcaacatatccagctcaacttgagtgttca 272  Q
    |||||| ||||| | ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47745347 tggactggtatagaagactataccacatggaatttactatacattgactattcaacatatccagctcaacttgagtgttca 47745267  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 22466455 - 22466377
Alignment:
Q  194 gactcgtatatatgaccataccacatgaactttactatacattgactattcaacatatccagctcaacttgagtgttca 272  Q
    |||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  22466455 gactagtatagaggaccataccacatggactttactatacattgactattcaacatatccaactcaacttgattgttca 22466377  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 36362998 - 36363078
Alignment:
Q  192 tggactcgtatatatgaccataccacatgaactttactatacattgactattcaacatatccagctcaacttgagtgttca 272  Q
    |||||| ||||| | ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36362998 tggactggtatagaagactataccacatggaatttactatacattgactattcaacatatccagctcaacttgagtgttca 36363078  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 28388722 - 28388787
Alignment:
Q  207 gaccataccacatgaactttactatacattgactattcaacatatccagctcaacttgagtgttca 272  Q
    |||||||||||||| | |||| |||| ||||||||||||| || || ||||||||| |||||||||    
T  28388722 gaccataccacatggattttattatatattgactattcaatatgtctagctcaactcgagtgttca 28388787  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 42494581 - 42494531
Alignment:
Q  207 gaccataccacatgaactttactatacattgactattcaacatatccagct 257  Q
    ||||||| ||||| |||| || |||||||||||||||||||||||| ||||    
T  42494581 gaccatatcacataaactctattatacattgactattcaacatatctagct 42494531  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 41092736 - 41092666
Alignment:
Q  192 tggactcgtatatatgaccataccacatgaactttactatacattgactattcaacatatccagctcaact 262  Q
    |||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  41092736 tggactggtatagaggaccataccacatggactttactatacattgactattcaacatgtccagctcaact 41092666  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 41087995 - 41087925
Alignment:
Q  192 tggactcgtatatatgaccataccacatgaactttactatacattgactattcaacatatccagctcaact 262  Q
    |||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||| |||| |||||||    
T  41087995 tggactggtatagaggaccataccacatggactttactatacattgactattcaacatgtccaactcaact 41087925  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 38810185 - 38810127
Alignment:
Q  207 gaccataccacatgaactttactatacattgactattcaacatatccagctcaacttga 265  Q
    ||||||| ||| || ||| | |||||||||||||||||||||| | |||||||||||||    
T  38810185 gaccatatcacgtggactctcctatacattgactattcaacatgtacagctcaacttga 38810127  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 6845560 - 6845601
Alignment:
Q  222 actttactatacattgactattcaacatatccagctcaactt 263  Q
    ||||||||||||||| ||||||||||||||| || |||||||    
T  6845560 actttactatacattaactattcaacatatctagatcaactt 6845601  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 5539143 - 5539085
Alignment:
Q  207 gaccataccacatgaactttactatacattgactattcaacatatccagctcaacttga 265  Q
    ||||||||||| || ||| | |||||||||||||||||||||| | || ||||||||||    
T  5539143 gaccataccacgtggactctcctatacattgactattcaacatgtacaactcaacttga 5539085  T

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