View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15847_low_1 (Length: 734)

Name: NF15847_low_1
Description: NF15847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15847_low_1
NF15847_low_1
[»] chr1 (12 HSPs)
chr1 (17-715)||(40036009-40036704)
chr1 (197-314)||(40031124-40031241)
chr1 (388-562)||(7892189-7892363)
chr1 (356-561)||(38139036-38139236)
chr1 (621-685)||(50911577-50911641)
chr1 (32-83)||(40031295-40031346)
chr1 (428-487)||(32574592-32574651)
chr1 (391-482)||(45984954-45985045)
chr1 (451-560)||(43043985-43044094)
chr1 (579-680)||(7892043-7892144)
chr1 (519-560)||(43067897-43067938)
chr1 (519-560)||(43082897-43082938)
[»] chr4 (3 HSPs)
chr4 (489-563)||(19965639-19965713)
chr4 (591-650)||(19965551-19965610)
chr4 (520-561)||(4230525-4230566)
[»] chr8 (2 HSPs)
chr8 (579-650)||(4788507-4788578)
chr8 (579-659)||(4296617-4296697)


Alignment Details
Target: chr1 (Bit Score: 603; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 17 - 715
Target Start/End: Complemental strand, 40036704 - 40036009
Alignment:
Q  17 agcagcaaccaaggggtcaaaatatcttaacgaccttgaatgatttgcaagcatagcagtcatcccannnnnnncttagcaagattaattgcataagaga 116  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||       ||||||||||||||||||||||||||    
T  40036704 agcagcaaccaaggggtcaaaatat-------accttgaatgatttgcaagcatagcagacatcccatttttttcttagcaagattaattgcataagaga 40036612  T
Q  117 aatctctaaacacatgattgagaaaaattcagaagacacatgcacaagatggaagtgaaaataagatgtgatgtaggaatattccaaactcaaagcacat 216  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40036611 aatctctaaacacatgattgagaaaagttcagaagacacatgcacaagatggaagtgaaaataagatgtgatgtaggaatattccaaactcaaagcacat 40036512  T
Q  217 ttacaagtaccacaagaagccttactaattctaacaaatatctaattttagcattaatataatgaactcttaaagactgaataaaaccatagcaagacag 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40036511 ttacaagtaccacaagaagccttactaattctaacaaatatctaattttagcattaatataatgaactcttaaagactgaataaaaccatagcaagacaa 40036412  T
Q  317 tgatgttcatctatatttcctagaacaatcagagatacttgacccagcaaaaacttcaaaactttctagcaaggaataaacacacagatagatagttaat 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40036411 tgatgttcatctatatttcctagaacaatcagagatacttgacccaacaaaaacttcagaactttctagcaaggaataaacacacagatagatagttaat 40036312  T
Q  417 attcaaaagataatcaccaggtccataaacttgctgcttagataatccaagtattcacactagacataatattcatagcatacaaacaaaaaagaaacgg 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40036311 attcaaaagataatcaccaggtccataaacttgctgcttagataatccaagtattcacactagacataatattcatagcatacaaacaaaaaagaaacgg 40036212  T
Q  517 tcctgccaccgtcgat----ctagaagtcagttctgggaacaaaagctgcagagtaagtttactagactagaccagaaatagacatacttcggatcaaag 612  Q
    ||||||||||||||||    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40036211 tcctgccaccgtcgatctagctagaagtcagttctgggaacaaaagctgcgaagtaagtttactagactagaccagaaatagacatacttcggatcaaag 40036112  T
Q  613 tccattttatgtaataacgacaatagacttgcctagattgataatccatcaaaattcacttcttcaatccctttctttgacttactgcctcctgcatcct 712  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40036111 tccattttgtgtaataacgacaatagacttgcctagattgataatccgtcaaaattcacttcttcaatccctttctttgacttactgcctcctgcatcct 40036012  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 40031241 - 40031124
Alignment:
Q  197 attccaaactcaaagcacatttacaagtaccacaagaagccttactaattctaacaaatatctaattttagcattaatataatgaactcttaaagactga 296  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  40031241 attccaaactcaaagcagatttacaagcagcacaagaagccttactaattctaacaaatatctaattttagcattagtataatgaactcctaaaggctga 40031142  T
Q  297 ataaaaccatagcaagac 314  Q
    ||||| ||||||| ||||    
T  40031141 ataaagccatagcgagac 40031124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 388 - 562
Target Start/End: Complemental strand, 7892363 - 7892189
Alignment:
Q  388 aggaataaacacacagatagatagttaatattcaaaagataatcaccaggtccataaacttgctgcttagataatccaagtattcacactagacataata 487  Q
    |||||||||||| || ||| |||||| | ||| |||||| || || |||| |   |||||| ||||||| | ||||||||||||||||||||||| ||||    
T  7892363 aggaataaacacgcaaataaatagttgacatttaaaagaaaagcagcaggcctggaaactttctgcttacaaaatccaagtattcacactagacacaata 7892264  T
Q  488 ttcatagcatacaaacaaaaaagaaacggtcctgccaccgtcgatctagaagtcagttctgggaacaaaagctgc 562  Q
     |||||||||| |||||||||||||| || |||||||||| ||||||||||| ||||||| ||||||||||||||    
T  7892263 atcatagcataaaaacaaaaaagaaatggacctgccaccgccgatctagaagccagttctaggaacaaaagctgc 7892189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 356 - 561
Target Start/End: Complemental strand, 38139236 - 38139036
Alignment:
Q  356 tgacccagcaaaaacttcaaaactttctagcaaggaataaacacacagatagatagttaatattcaaaagataatcaccaggtccataaacttgctgctt 455  Q
    ||||||||||||||||| ||||| |   | ||||||||||||||| |  || |||||| |||||||||||| ||||| |||||||  ||| |||||||||    
T  38139236 tgacccagcaaaaactt-aaaacatcacaacaaggaataaacacaaa--taaatagttgatattcaaaagaaaatcagcaggtccggaaatttgctgctt 38139140  T
Q  456 agataatccaagtattcacactagacataatattcatagcatacaaacaaaaaagaaacggtcctgccaccgtcgatctagaagtcagttctgggaacaa 555  Q
    | | |||| |||||||||||| ||||| | || |||||||||| |||| |||||||||||| ||||||||| || ||||||||| ||||||| |||||||    
T  38139139 acaaaatc-aagtattcacacaagacacagtaatcatagcataaaaacgaaaaagaaacgg-cctgccaccatcaatctagaagccagttcttggaacaa 38139042  T
Q  556 aagctg 561  Q
    ||||||    
T  38139041 aagctg 38139036  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 621 - 685
Target Start/End: Original strand, 50911577 - 50911641
Alignment:
Q  621 atgtaataacgacaatagacttgcctagattgataatccatcaaaattcacttcttcaatccctt 685  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||    
T  50911577 atgtaataacgacaatagacttccctagatagataatccagcaaaattcacttcttcaatacctt 50911641  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 40031346 - 40031295
Alignment:
Q  32 gtcaaaatatcttaacgaccttgaatgatttgcaagcatagcagtcatccca 83  Q
    ||||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  40031346 gtcaaaagatcttaacgaacttgaatgatttgcaagcatagcagacatccca 40031295  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 428 - 487
Target Start/End: Complemental strand, 32574651 - 32574592
Alignment:
Q  428 aatcaccaggtccataaacttgctgcttagataatccaagtattcacactagacataata 487  Q
    ||||| |||||||| |||||||||||||| | ||||||||||||||| ||||||| ||||    
T  32574651 aatcaacaggtccagaaacttgctgcttacaaaatccaagtattcacgctagacacaata 32574592  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 391 - 482
Target Start/End: Complemental strand, 45985045 - 45984954
Alignment:
Q  391 aataaacacacagatagatagttaatattcaaaagataatcaccaggtccataaacttgctgcttagataatccaagtattcacactagaca 482  Q
    |||||||||||| ||| | |||| |||||||||| | ||||| |||||||| ||||| ||||||   | ||||||||| |||||||||||||    
T  45985045 aataaacacacaaataaagagttgatattcaaaacaaaatcagcaggtccagaaactcgctgctagcaaaatccaagtgttcacactagaca 45984954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 451 - 560
Target Start/End: Original strand, 43043985 - 43044094
Alignment:
Q  451 tgcttagataatccaagtattcacactagacataatattcatagcatacaaacaaaaaagaaacggtcctgccaccgtcgatctagaagtcagttctggg 550  Q
    |||||| | ||||||||| |||| |||||||| || | | | |||||| |||||||| ||| |  || ||||||||||||||||||||  |||||||| |    
T  43043985 tgcttacaaaatccaagtgttcagactagacacaacaattaaagcataaaaacaaaacagatatagtactgccaccgtcgatctagaacccagttctgag 43044084  T
Q  551 aacaaaagct 560  Q
    |||| |||||    
T  43044085 aacacaagct 43044094  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 680
Target Start/End: Complemental strand, 7892144 - 7892043
Alignment:
Q  579 actagaccagaaatagacatacttcggatcaaagtccattttatgtaataacgacaatagacttgcctagattgataatccatcaaaattcacttcttca 678  Q
    ||||||| | |||||||||| ||  ||||||| | ||||||  |||||||| |||||||||||| ||||||| ||| |||   ||| |||||||| ||||    
T  7892144 actagacgacaaatagacatcctatggatcaaggaccatttattgtaataaagacaatagacttccctagatagatcatcttgcaagattcactttttca 7892045  T
Q  679 at 680  Q
    ||    
T  7892044 at 7892043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 560
Target Start/End: Complemental strand, 43067938 - 43067897
Alignment:
Q  519 ctgccaccgtcgatctagaagtcagttctgggaacaaaagct 560  Q
    ||||||||||||||||||||  |||||||| |||||||||||    
T  43067938 ctgccaccgtcgatctagaacccagttctgagaacaaaagct 43067897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 560
Target Start/End: Original strand, 43082897 - 43082938
Alignment:
Q  519 ctgccaccgtcgatctagaagtcagttctgggaacaaaagct 560  Q
    ||||||||||||||||||||  |||||||| |||||||||||    
T  43082897 ctgccaccgtcgatctagaacccagttctgagaacaaaagct 43082938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 19965713 - 19965639
Alignment:
Q  489 tcatagcatacaaacaaaaaagaaacggtcctgccaccgtcgatctagaagtcagttctgggaacaaaagctgca 563  Q
    |||||||||| |||| ||||||||| || |||||||| ||||||||||||| ||||||||||||| |||||||||    
T  19965713 tcatagcataaaaaccaaaaagaaatggccctgccactgtcgatctagaagccagttctgggaacgaaagctgca 19965639  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 591 - 650
Target Start/End: Complemental strand, 19965610 - 19965551
Alignment:
Q  591 atagacatacttcggatcaaagtccattttatgtaataacgacaatagacttgcctagat 650  Q
    ||||||||||| |||||||||  ||||||  ||||||||||||||||||||| |||||||    
T  19965610 atagacatactgcggatcaaataccatttattgtaataacgacaatagactttcctagat 19965551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 561
Target Start/End: Original strand, 4230525 - 4230566
Alignment:
Q  520 tgccaccgtcgatctagaagtcagttctgggaacaaaagctg 561  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  4230525 tgccaccgtcgatctagaacccagttctgggaacaaaagctg 4230566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 579 - 650
Target Start/End: Complemental strand, 4788578 - 4788507
Alignment:
Q  579 actagaccagaaatagacatacttcggatcaaagtccattttatgtaataacgacaatagacttgcctagat 650  Q
    ||||||| ||||||||||||||| ||||| |||| ||||||  ||||||| ||||||||||||| |||||||    
T  4788578 actagacgagaaatagacatactacggatgaaagaccatttattgtaatagcgacaatagacttccctagat 4788507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 659
Target Start/End: Original strand, 4296617 - 4296697
Alignment:
Q  579 actagaccagaaatagacatacttcggatcaaagtccattttatgtaataacgacaatagacttgcctagattgataatcc 659  Q
    ||||||| ||||||||||||||| | ||| |||| ||||||  || |||||||||||||||||| ||||||| ||| ||||    
T  4296617 actagacgagaaatagacatactacagatgaaagaccatttattgcaataacgacaatagacttccctagatagatcatcc 4296697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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