View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15847_low_10 (Length: 229)
Name: NF15847_low_10
Description: NF15847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15847_low_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 29103885 - 29104107
Alignment:
| Q |
7 |
aaatagatatgataacgatacattcttgcattgtttcgatttgctatcaattttacaaagaagaaccagaatcagccacgctactcgaacggaaaatcca |
106 |
Q |
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| T |
29103885 |
aaatagatatgataacgatacattcttgcattgtttcgatttgctatcaattttacaaagaagaaccagaatcagccacgctattcgaacggaaaatcca |
29103984 |
T |
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| Q |
107 |
gtctccatttcaggagtattgtttgatgattctggactgtataagtaagattctggcaacggtgacttcgacagaggaggaatgtcaaagaatatctcag |
206 |
Q |
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| T |
29103985 |
gtctccatttcaggagtattgtttgatgattctggactgtataagtaagattctggcaacggtgacttcgacagaggaggaatgtcaaagaatatctcag |
29104084 |
T |
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| Q |
207 |
agagcacgttgctgtaatctgca |
229 |
Q |
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| T |
29104085 |
agagcacgttgctgtaatctgca |
29104107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 29089624 - 29089844
Alignment:
| Q |
7 |
aaatagatatgataacgatacattcttgcattgtttcgatttgctatcaattttacaaagaagaaccagaatcagccacgctactcgaacggaaaatcca |
106 |
Q |
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||||||||||||||| |||| ||||||||||| ||||||||| || ||||| || |||||||| ||||||| |||||||| ||||| ||||||| || |
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| T |
29089624 |
aaatagatatgataaggatatgttcttgcattgcttcgatttgacgtcgattttgcagagaagaactagaatcaaccacgctattcgaatggaaaattca |
29089723 |
T |
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| Q |
107 |
gtctccatttcaggagtattgtttgatgattctggactgtataagtaagattctggcaacggtgacttcgacagaggaggaatgtcaaagaatatctcag |
206 |
Q |
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| T |
29089724 |
gtttcaatttccgtcgagtagttggatgattctggactgtataagtaagattctggcaatggggaattcaacgacggaggaatgtcgaagaatatttcag |
29089823 |
T |
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| Q |
207 |
agagcacgttgctgtaatctg |
227 |
Q |
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| T |
29089824 |
aaagcacgttgctgtaatctg |
29089844 |
T |
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