View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15847_low_13 (Length: 203)
Name: NF15847_low_13
Description: NF15847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15847_low_13 |
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| [»] chr4 (5 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 26192353 - 26192166
Alignment:
| Q |
16 |
attctctagagtccatgctcgaatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccc |
115 |
Q |
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| T |
26192353 |
attctctagagtccatgctcgaatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccc |
26192254 |
T |
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| Q |
116 |
tctacaaaagtacaccgttttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcccctcccatatccatatgcc |
203 |
Q |
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| T |
26192253 |
tctacaaaagtacactgttttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatccccttccatatccatatgcc |
26192166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 26175374 - 26175213
Alignment:
| Q |
23 |
agagtccatgctcgaatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccctctacaa |
122 |
Q |
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|||| ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||||||||| ||||||||| |||||||||| |
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| T |
26175374 |
agagcccatgcttgaatttgttgacacaattattagtttaaacgtcaaatatagtattctgaccaccagcaacccctcaaccagaactatccctctacaa |
26175275 |
T |
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| Q |
123 |
aagtacaccgttttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcc |
184 |
Q |
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| T |
26175274 |
aagtacaccattttagaagtatcacatgatattgatgttccctaatgggtagcttgtcatcc |
26175213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 26180072 - 26179887
Alignment:
| Q |
18 |
tctctagagtccatgctcgaatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccctc |
117 |
Q |
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||||||||||||||||||||||||||| |||| || |||||||| | | |||| ||||||||||||||| | ||| |||||||| | | || |||| |
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| T |
26180072 |
tctctagagtccatgctcgaatttgttaacacgatctttggttcagatgccaaaattagtattctaaccaccaacaaaccctcaccgacagctgtccctt |
26179973 |
T |
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| Q |
118 |
tacaaaagtacaccgttttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcccctcccatatccatatgcc |
203 |
Q |
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|||| ||||||||| |||| |||||||| ||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
26179972 |
tacagaagtacaccattttggaagtatcccatgatattgatgctccaaaatgggtagcttgtcatcccctctcatatccatatgcc |
26179887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 26162272 - 26162090
Alignment:
| Q |
21 |
ctagagtccatgctcgaatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccctctac |
120 |
Q |
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||||||||||||||||||||||||||||| || ||||||||| ||| ||| ||| |||||| || || | ||| |||||| | | | | | |||| ||| |
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| T |
26162272 |
ctagagtccatgctcgaatttgttgacacgatcattggttcatacgcgaaacataatattctcactaccaccaaaccctcatcgacagccatccctttac |
26162173 |
T |
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| Q |
121 |
aaaagtacaccgttttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcccctcccatatccatatgcc |
203 |
Q |
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| T |
26162172 |
agaattacaccattttggaagtatcacatgatattgatgctcccaaatgggtagcttgtcatcccctctcatatccatatgcc |
26162090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 25929288 - 25929107
Alignment:
| Q |
22 |
tagagtccatgctcgaatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccctctaca |
121 |
Q |
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||||||||||||| ||||||||||||| ||| |||||||| || ||| ||| | |||| || || | | ||||||||||| ||| |||||| || |
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| T |
25929288 |
tagagtccatgcttgaatttgttgacaaaataattggttccgactccaagcataatgttcttactaccacccacccctcaccctcggctatccctctcca |
25929189 |
T |
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| Q |
122 |
aaagtacaccgttttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcccctcccatatccatatgcc |
203 |
Q |
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||| |||||| ||||| ||||||||| ||| ||| |||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
25929188 |
aaaatacaccattttaaaagtatcacgtgacattagtgttcccaaatgggtatcttgccatcccctcccatatccatatgcc |
25929107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 32189485 - 32189666
Alignment:
| Q |
22 |
tagagtccatgctcgaatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccctctaca |
121 |
Q |
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||||||||||||| ||||| |||| |||||| ||||||||| | | ||||||| |||||| || || |||||||| ||||||| ||| |||||||| || |
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| T |
32189485 |
tagagtccatgcttgaattcgttggcacaataattggttcagaagccaaatatgatattctcacaaccagcaacccatcacccacaaccacccctctcca |
32189584 |
T |
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| Q |
122 |
aaagtacaccgttttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcccctcccatatccatatgcc |
203 |
Q |
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|| |||||| |||| |||||||||| ||| ||| ||| ||| |||||||| ||||| |||||| ||||||||||||||||| |
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| T |
32189585 |
gaaatacaccattttggaagtatcacctgacattaatgctccaaaatgggttgcttgccatcccatcccatatccatatgcc |
32189666 |
T |
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