View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15847_low_3 (Length: 430)

Name: NF15847_low_3
Description: NF15847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15847_low_3
NF15847_low_3
[»] chr6 (4 HSPs)
chr6 (1-414)||(34712670-34713084)
chr6 (374-414)||(5121059-5121099)
chr6 (374-414)||(18969555-18969595)
chr6 (374-414)||(24063347-24063387)
[»] chr2 (10 HSPs)
chr2 (1-322)||(27005724-27006040)
chr2 (1-254)||(27005460-27005710)
chr2 (374-414)||(8043370-8043410)
chr2 (371-414)||(27006067-27006111)
chr2 (374-414)||(36150663-36150703)
chr2 (196-241)||(42711814-42711859)
chr2 (374-414)||(2054799-2054839)
chr2 (374-414)||(34452578-34452618)
chr2 (374-414)||(37875719-37875759)
chr2 (374-411)||(863537-863574)
[»] chr4 (7 HSPs)
chr4 (39-284)||(37941939-37942181)
chr4 (378-414)||(25478371-25478407)
chr4 (374-414)||(42419429-42419469)
chr4 (374-414)||(12834863-12834903)
chr4 (374-414)||(18033085-18033125)
chr4 (374-414)||(36855237-36855277)
chr4 (374-414)||(50696627-50696667)
[»] chr3 (9 HSPs)
chr3 (145-273)||(15099597-15099725)
chr3 (39-120)||(15099458-15099537)
chr3 (373-414)||(16303075-16303116)
chr3 (40-120)||(52615939-52616017)
chr3 (374-414)||(46888921-46888961)
chr3 (374-414)||(46915297-46915337)
chr3 (374-414)||(50802276-50802316)
chr3 (374-414)||(50873561-50873601)
chr3 (374-414)||(37986742-37986782)
[»] chr8 (4 HSPs)
chr8 (374-414)||(20054715-20054755)
chr8 (374-414)||(34654532-34654572)
chr8 (373-411)||(14762915-14762953)
chr8 (374-414)||(41273280-41273320)
[»] chr7 (5 HSPs)
chr7 (374-414)||(30002245-30002285)
chr7 (374-414)||(30469018-30469058)
chr7 (374-414)||(36784087-36784127)
chr7 (374-414)||(42489659-42489699)
chr7 (374-414)||(32022232-32022272)
[»] chr5 (8 HSPs)
chr5 (374-414)||(4737490-4737530)
chr5 (374-414)||(9918172-9918212)
chr5 (374-414)||(10394551-10394591)
chr5 (374-414)||(14481066-14481106)
chr5 (374-414)||(25836298-25836338)
chr5 (374-415)||(491753-491794)
chr5 (374-411)||(12281438-12281475)
chr5 (374-414)||(3259515-3259555)
[»] chr1 (8 HSPs)
chr1 (374-414)||(18248968-18249008)
chr1 (374-414)||(23602181-23602221)
chr1 (374-414)||(24081782-24081822)
chr1 (374-414)||(31151121-31151161)
chr1 (374-414)||(48577129-48577169)
chr1 (374-414)||(51661044-51661084)
chr1 (374-411)||(39870383-39870420)
chr1 (374-414)||(23173727-23173767)


Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 34712670 - 34713084
Alignment:
Q  1 acgcaaatgctcagtgaagaatcagtagnnnnnnntcagaagcacgagatattctacaagcacaagtaaaccaacnnnnnnnnncaaagacatgaactca 100  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  34712670 acgcaaatgctcagtgaagaatcagtagaaaaaaatcagaagcacgagatattctacaagcacaagtaaaccaacaaaaaaaaacaaagacatgaactca 34712769  T
Q  101 gtttagatttatcaaagttaggtatagatnnnnnnnnnnccagtaagttgtgcttaacttttctttataatacgcaaacgaactacaaataatgttcaca 200  Q
    |||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34712770 gtttagatttatcaaagttaggtatagataaaaaaaaa-ccagtaagttgtgcttaacttttctttataatacgcaaacgaactacaaataatgttcaca 34712868  T
Q  201 gaggactaatttaccttttcaagtttcctttgactgacaagttgaacctaccgtccttttgaaattttgattttgcggagagtttttgcttttgctgaag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34712869 gaggactaatttaccttttcaagtttcctttgactgacaagttgaacctaccgttcttttgaaattttgattttgcggagagtttttgcttttgctgaag 34712968  T
Q  301 attggggaacaaacatgacattgataccattaagtatacaagtgtaaaattaagtatataccgtccaaca--aacatatgagataaaaacaaagaaatat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  34712969 attggggaacaaacatgacattgataccattaagtatacaagtgtaaaattaagtatataccgtccaacatcaacatatgagataaaaacaaagaaatat 34713068  T
Q  399 cattgatggtgatgat 414  Q
    ||||||||||||||||    
T  34713069 cattgatggtgatgat 34713084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 5121099 - 5121059
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  5121099 atatgagataaagacaaagaaatatcattgatggtgatgat 5121059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 18969555 - 18969595
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  18969555 atatgagataaagacaaagaaatatcattgatggtgatgat 18969595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 24063387 - 24063347
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  24063387 atatgagataaagacaaagaaatatcattgatggtgatgat 24063347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 27005724 - 27006040
Alignment:
Q  1 acgcaaatgctcagtgaagaatcagtagnnnnnnntcagaagcacgagatattctacaagcacaagtaaaccaacnnnnnnnnncaaagacatgaactca 100  Q
    |||||||||||||||||||||||| |||       ||| |||||||| |||||||||||||||||||||||||||         |||||| |||||||||    
T  27005724 acgcaaatgctcagtgaagaatcaatagaaaaaa-tcataagcacgaaatattctacaagcacaagtaaaccaacaaaaaaaa-caaagaaatgaactca 27005821  T
Q  101 gtttagatttatcaaagttaggtatagatnnnnnnnnnnccagtaagttgtgcttaacttttctttataatacgcaaacgaactacaaataatgttcaca 200  Q
    |||||||||||||||||||| ||||| ||          |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27005822 gtttagatttatcaaagttaagtataaataaaaaaaa--ccagtaagttgtgcttaacttttctttataatacgcaaacgaaccacaaataatgttcaca 27005919  T
Q  201 gaggactaatttaccttttcaagtttcctttgactgacaagttgaacctaccgtccttttgaaattttgattttgcggagagtttttgcttttgctgaag 300  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||    
T  27005920 gaggactaatttaccttttcaagtttcctttgagtgacaagttgaacctaccgtgcttttgaaattttgattttgcggagag-ttgtgcttttgctgaag 27006018  T
Q  301 attggggaacaaacatgacatt 322  Q
    ||||||||||||||||||||||    
T  27006019 attggggaacaaacatgacatt 27006040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 27005460 - 27005710
Alignment:
Q  1 acgcaaatgctcagtgaagaatcagtagnnnnnnntcagaagcacgagatattctacaagcacaagtaaaccaacnnnnnnnnncaaagacatgaactca 100  Q
    |||||||||||||||||||||||| |||       |||||||||||| |||||||||||||||||||||||||||         |||||| |||||||||    
T  27005460 acgcaaatgctcagtgaagaatcaatagaaaaaa-tcagaagcacgaaatattctacaagcacaagtaaaccaacaaaaaaaaacaaagaaatgaactca 27005558  T
Q  101 gtttagatttatcaaagttaggtatagatnnnnnnnnnnccagtaagttgtgcttaacttttctttataatacgcaaacgaactacaaataatgttcaca 200  Q
    |||||||||||||||||||| ||||||||          |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27005559 gtttagatttatcaaagttaagtatagataaaaaaaa--ccagtaagttgtgcttaacttttctttataatacgcaaacgaaccacaaataatgttcaca 27005656  T
Q  201 gaggactaatttaccttttcaagtttcctttgactgacaagttgaacctaccgt 254  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27005657 gagtactaatttaccttttcaagtttcctttgagtgacaagttgaacctaccgt 27005710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 8043410 - 8043370
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  8043410 atatgagataaagacaaagaaatatcattgatggtgatgat 8043370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 414
Target Start/End: Original strand, 27006067 - 27006111
Alignment:
Q  371 aacatatgagataaaa-acaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  27006067 aacatatgagataaaagacaaagaaatatcattgatggtgatgat 27006111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 36150703 - 36150663
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  36150703 atatgagataaagacaaagaaatatcattgatggtgatgat 36150663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 42711859 - 42711814
Alignment:
Q  196 tcacagaggactaatttaccttttcaagtttcctttgactgacaag 241  Q
    ||||| ||||||||||||||||||||||||||| ||||| ||||||    
T  42711859 tcacataggactaatttaccttttcaagtttcccttgaccgacaag 42711814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 2054799 - 2054839
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  2054799 atatgagataaagacaaataaatatcattgatggtgatgat 2054839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 34452618 - 34452578
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  34452618 atataagataaagacaaagaaatatcattgatggtgatgat 34452578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 37875759 - 37875719
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  37875759 atatgagataaagactaagaaatatcattgatggtgatgat 37875719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 411
Target Start/End: Complemental strand, 863574 - 863537
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgat 411  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  863574 atatgagataaagacaaagaaatatcattgatagtgat 863537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 39 - 284
Target Start/End: Complemental strand, 37942181 - 37941939
Alignment:
Q  39 gaagcacgagatattctacaagcacaagtaaaccaacnnnnnnnnncaaagacatgaactcagtttagatttatcaaagttaggtatagatnnnnnnnnn 138  Q
    |||||||||||||||||||||||||||||||||||||          ||| ||||||||||||||||||||||||||||||| | ||| ||             
T  37942181 gaagcacgagatattctacaagcacaagtaaaccaacaaaaaaaataaaa-acatgaactcagtttagatttatcaaagttaaggataaataaaaaaaa- 37942084  T
Q  139 nccagtaagttgtgcttaacttttctttataatacgcaaacgaactacaaataatgttcacagaggactaatttaccttttcaagtttcctttgactgac 238  Q
     |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||||    
T  37942083 -ccagtaagttgtgcttaacttttctttataatacacaaaggaactacaaataatgttgaaagaggactaatttaccttttcaagtttccgttgagtgac 37941985  T
Q  239 aagttgaacctaccgtccttttgaaattttgattttgcggagagtt 284  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||    
T  37941984 aagttgaacctactgtccttttgaaatttttattttgcggagagtt 37941939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 25478407 - 25478371
Alignment:
Q  378 gagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||||||||||||||||||||||||||||    
T  25478407 gagataaaaacaaagaaatatcattgatggtgatgat 25478371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 42419429 - 42419469
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  42419429 atatgagataaagacaaagaaatatcattgatggtgatgat 42419469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 12834863 - 12834903
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  12834863 atatgagataaagacaaagaaatatcattgatagtgatgat 12834903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 18033125 - 18033085
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  18033125 atatgagataaagactaagaaatatcattgatggtgatgat 18033085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 36855277 - 36855237
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  36855277 atatgagataaagactaagaaatatcattgatggtgatgat 36855237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 50696627 - 50696667
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  50696627 atatgatataaagacaaagaaatatcattgatggtgatgat 50696667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 145 - 273
Target Start/End: Original strand, 15099597 - 15099725
Alignment:
Q  145 aagttgtgcttaacttttctttataatacgcaaacgaactacaaataatgttcacagaggactaatttaccttttcaagtttcctttgactgacaagttg 244  Q
    |||||||||||||||||| |||||||||| | || ||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||||||||||    
T  15099597 aagttgtgcttaacttttgtttataatacacgaaggaactacaaataatgttgaaagaggactaatttaccttttcaagtttccgttgagtgacaagttg 15099696  T
Q  245 aacctaccgtccttttgaaattttgattt 273  Q
    ||||||| |||||||||||||||| ||||    
T  15099697 aacctactgtccttttgaaatttttattt 15099725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 15099458 - 15099537
Alignment:
Q  39 gaagcacgagatattctacaagcacaagtaaaccaacnnnnnnnnncaaagacatgaactcagtttagatttatcaaagtta 120  Q
    |||||||||||||||||||||||||||||||||||||          ||| |||||||||||||||||||||||||||||||    
T  15099458 gaagcacgagatattctacaagcacaagtaaaccaacaaaaaaat--aaaaacatgaactcagtttagatttatcaaagtta 15099537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 16303075 - 16303116
Alignment:
Q  373 catatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  16303075 catatgagataaagacaaagaaatatcattgatggtgatgat 16303116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 52616017 - 52615939
Alignment:
Q  40 aagcacgagatattctacaagcacaagtaaaccaacnnnnnnnnncaaagacatgaactcagtttagatttatcaaagtta 120  Q
    ||||||||||||||||||||||||||||||||||||          ||| | |||||||||||||||||||||||||||||    
T  52616017 aagcacgagatattctacaagcacaagtaaaccaacaaaaaaat--aaaaaaatgaactcagtttagatttatcaaagtta 52615939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 46888921 - 46888961
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  46888921 atatgagataaagacaaagaaatatcattgatggtgatgat 46888961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 46915337 - 46915297
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  46915337 atatgagataaagacaaagaaatatcattgatggtgatgat 46915297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 50802276 - 50802316
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  50802276 atatgagataaagacaaagaaatatcattgatggtgatgat 50802316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 50873601 - 50873561
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  50873601 atatgagataaagacaaagaaatatcattgatggtgatgat 50873561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 37986782 - 37986742
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  37986782 atatgagataaagacaaagaaatatcattgattgtgatgat 37986742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 20054715 - 20054755
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  20054715 atatgagataaagacaaagaaatatcattgatggtgatgat 20054755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 34654572 - 34654532
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  34654572 atatgagataaagacaaagaaatatcattgatggtgatgat 34654532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 14762953 - 14762915
Alignment:
Q  373 catatgagataaaaacaaagaaatatcattgatggtgat 411  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  14762953 catatgagataaagacaaagaaatatcattgatggtgat 14762915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 41273280 - 41273320
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  41273280 atatgagataaagataaagaaatatcattgatggtgatgat 41273320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 30002245 - 30002285
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  30002245 atatgagataaagacaaagaaatatcattgatggtgatgat 30002285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 30469058 - 30469018
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  30469058 atatgagataaagacaaagaaatatcattgatggtgatgat 30469018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 36784127 - 36784087
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  36784127 atatgagataaagacaaagaaatatcattgatggtgatgat 36784087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 42489659 - 42489699
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  42489659 atatgagataaagacaaagaaatatcattgatggtgatgat 42489699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 32022272 - 32022232
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  32022272 atatgagataaagacagggaaatatcattgatggtgatgat 32022232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 4737490 - 4737530
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  4737490 atatgagataaagacaaagaaatatcattgatggtgatgat 4737530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 9918172 - 9918212
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  9918172 atatgagataaagacaaagaaatatcattgatggtgatgat 9918212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 10394551 - 10394591
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  10394551 atatgagataaagacaaagaaatatcattgatggtgatgat 10394591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 14481106 - 14481066
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  14481106 atatgagataaagacaaagaaatatcattgatggtgatgat 14481066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 25836298 - 25836338
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  25836298 atatgagataaagacaaagaaatatcattgatggtgatgat 25836338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 491794 - 491753
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgatt 415  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  491794 atatgagataaagacaaagaaatgtcattgatggtgatgatt 491753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 411
Target Start/End: Complemental strand, 12281475 - 12281438
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgat 411  Q
    |||||||||||| |||||||||||||||||||||||||    
T  12281475 atatgagataaagacaaagaaatatcattgatggtgat 12281438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 3259515 - 3259555
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  3259515 atatgagataaagacaaagaaatatcattgatgttgatgat 3259555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 18248968 - 18249008
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  18248968 atatgagataaagacaaagaaatatcattgatggtgatgat 18249008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 23602181 - 23602221
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  23602181 atatgagataaagacaaagaaatatcattgatggtgatgat 23602221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 24081822 - 24081782
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  24081822 atatgagataaagacaaagaaatatcattgatggtgatgat 24081782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 31151121 - 31151161
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  31151121 atatgagataaagacaaagaaatatcattgatggtgatgat 31151161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 48577169 - 48577129
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  48577169 atatgagataaagacaaagaaatatcattgatggtgatgat 48577129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 51661044 - 51661084
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  51661044 atatgagataaagacaaagaaatatcattgatggtgatgat 51661084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 411
Target Start/End: Complemental strand, 39870420 - 39870383
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgat 411  Q
    |||||||||||| |||||||||||||||||||||||||    
T  39870420 atatgagataaagacaaagaaatatcattgatggtgat 39870383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 23173727 - 23173767
Alignment:
Q  374 atatgagataaaaacaaagaaatatcattgatggtgatgat 414  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  23173727 atatgagataaagataaagaaatatcattgatggtgatgat 23173767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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