View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15848_high_1 (Length: 453)

Name: NF15848_high_1
Description: NF15848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15848_high_1
NF15848_high_1
[»] chr2 (2 HSPs)
chr2 (15-89)||(169293-169367)
chr2 (179-236)||(15996736-15996793)
[»] chr4 (2 HSPs)
chr4 (179-234)||(51164543-51164598)
chr4 (198-234)||(8069983-8070019)
[»] chr5 (1 HSPs)
chr5 (178-234)||(15594998-15595054)
[»] chr8 (1 HSPs)
chr8 (180-293)||(40819329-40819446)
[»] chr3 (1 HSPs)
chr3 (180-234)||(48953950-48954004)
[»] chr1 (2 HSPs)
chr1 (189-234)||(38081616-38081661)
chr1 (179-225)||(30058440-30058486)
[»] chr6 (1 HSPs)
chr6 (179-234)||(12622588-12622641)


Alignment Details
Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 169367 - 169293
Alignment:
Q  15 aagaagaacagagtatatatatagttggccttactattaagaagcaacaacatacagtacaatctttcttcgttg 89  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  169367 aagaagaacagagtatatttatagttggccttactattaagaagcaacaacatacagtacaatctttcttcgttg 169293  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 15996736 - 15996793
Alignment:
Q  179 cttaagataaaattaagtaataaattttatattggaaaaataatttttgaaactttga 236  Q
    ||||| ||| |||||||||||||||||||||||  ||| ||||||||| |||| ||||    
T  15996736 cttaaaatagaattaagtaataaattttatattaaaaatataattttttaaacgttga 15996793  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 51164543 - 51164598
Alignment:
Q  179 cttaagataaaattaagtaataaattttatattggaaaaataatttttgaaacttt 234  Q
    ||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  51164543 cttaaaatagaattaagtaataaattttatattgaaaaaataacttttgaaacttt 51164598  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 8070019 - 8069983
Alignment:
Q  198 ataaattttatattggaaaaataatttttgaaacttt 234  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  8070019 ataaattttatattgaaaatataatttttgaaacttt 8069983  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 15594998 - 15595054
Alignment:
Q  178 tcttaagataaaattaagtaataaattttatattggaaaaataatttttgaaacttt 234  Q
    |||||| ||| ||||||| |||||||||||||||| |||||||| ||||||||||||    
T  15594998 tcttaaaatataattaagaaataaattttatattgaaaaaataacttttgaaacttt 15595054  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 40819329 - 40819446
Alignment:
Q  180 ttaagataaaattaagtaataaattttatattggaaaaataatttttgaaacttt---gacaatgcataatgtttgaaaaaagactttcatattta-ttt 275  Q
    |||| ||| ||||| |||||||||||||||||| ||||||||  |||||||||||   || |||||| ||| | | |||||| |||||||||||||  ||    
T  40819329 ttaaaatataattaggtaataaattttatattgaaaaaataacatttgaaacttttaagagaatgcacaatttctaaaaaaaaactttcatatttagctt 40819428  T
Q  276 tttaacttatgctccaaa 293  Q
     ||||||||||| |||||    
T  40819429 cttaacttatgccccaaa 40819446  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 48954004 - 48953950
Alignment:
Q  180 ttaagataaaattaagtaataaattttatattggaaaaataatttttgaaacttt 234  Q
    |||| ||| |||||||||||||||||||||||| ||| |||| ||||||||||||    
T  48954004 ttaaaatagaattaagtaataaattttatattgaaaagataacttttgaaacttt 48953950  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 38081616 - 38081661
Alignment:
Q  189 aattaagtaataaattttatattggaaaaataatttttgaaacttt 234  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||||    
T  38081616 aattaagtaataaattttatattgaaaagataacttttgaaacttt 38081661  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 30058486 - 30058440
Alignment:
Q  179 cttaagataaaattaagtaataaattttatattggaaaaataatttt 225  Q
    ||||| ||| |||||||||||||||||||| ||| ||||||||||||    
T  30058486 cttaaaatagaattaagtaataaattttatgttgaaaaaataatttt 30058440  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 12622641 - 12622588
Alignment:
Q  179 cttaagataaaattaagtaataaattttatattggaaaaataatttttgaaacttt 234  Q
    ||||| ||| |||||||||||||||||||| |||  ||||||| ||||||||||||    
T  12622641 cttaaaatagaattaagtaataaattttatgttg--aaaataacttttgaaacttt 12622588  T

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