View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15848_high_4 (Length: 278)
Name: NF15848_high_4
Description: NF15848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15848_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 130 - 258
Target Start/End: Original strand, 51267445 - 51267573
Alignment:
| Q |
130 |
taatccttatcagatcagacgtaaccggaccgaaaacgacggataaatcggatccggatcgaccaccattaaccctccagccaacatcactaaacccacc |
229 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51267445 |
taatccttatcagatcagatgtaaccggaccgaaaacgacggataaatcggatccggatcgaccaccattaaccctccagccaacatcactaaaaccacc |
51267544 |
T |
|
| Q |
230 |
acgaaatcagcccggctcctccacaaacc |
258 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
51267545 |
acgaaatcagcccggctcctccacaaacc |
51267573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 130 - 258
Target Start/End: Original strand, 26681114 - 26681242
Alignment:
| Q |
130 |
taatccttatcagatcagacgtaaccggaccgaaaacgacggataaatcggatccggatcgaccaccattaaccctccagccaacatcactaaacccacc |
229 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| ||| | |
|
|
| T |
26681114 |
taatccttatcaaatcggacgaaaccggaccgaaaacggcggataaatcagatccggatcgaccaccattatccctccagtcaacatcactaaaaccatc |
26681213 |
T |
|
| Q |
230 |
acgaaatcagcccggctcctccacaaacc |
258 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26681214 |
acgaaatcagcccggctcctccacaaacc |
26681242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University