View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15848_low_3 (Length: 308)

Name: NF15848_low_3
Description: NF15848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15848_low_3
NF15848_low_3
[»] chr7 (3 HSPs)
chr7 (1-300)||(14788175-14788475)
chr7 (83-300)||(15229212-15229430)
chr7 (83-300)||(15239337-15239555)
[»] chr5 (1 HSPs)
chr5 (1-300)||(17544497-17544797)
[»] chr6 (1 HSPs)
chr6 (9-75)||(9045163-9045229)
[»] chr4 (1 HSPs)
chr4 (17-75)||(35507145-35507203)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 14788475 - 14788175
Alignment:
Q  1 aacaagtgcttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgtaaggtgtaaaatacatctttctc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14788475 aacaagtgcttgttatgaaggtaaaaaaggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgtaaggtgtaaaatacatctttctc 14788376  T
Q  101 aaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact-nnnnnnnnntttgatacactaatattc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||    
T  14788375 aaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatactaaaaaaaaaatttgatacactaatattc 14788276  T
Q  200 catgaagcatggacaccttcaaaattaatcgtgtcttcatgtctgacatctgtatgatactcgtacaatacgtgtcaccgtctgacaacccaaacaaagg 299  Q
     ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14788275 aatgaagcatggacaccttcaaaattaatcgtgttttcatgtctgacatctgtatgatactcgtacaatacgtgtcaccgtctaacaacccaaacaaagg 14788176  T
Q  300 t 300  Q
    |    
T  14788175 t 14788175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 83 - 300
Target Start/End: Complemental strand, 15229430 - 15229212
Alignment:
Q  83 gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatactnnnnnnnnn- 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  15229430 gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatactaaaaaaaaaa 15229331  T
Q  182 tttgatacactaatattccatgaagcatggacaccttcaaaattaatcgtgtcttcatgtctgacatctgtatgatactcgtacaatacgtgtcaccgtc 281  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15229330 tttgatacactaatattcaatgaagcatggacaccttcaaaattaatcgtgttttcatgtctgacatctgtatgatactcgtacaatacgtgtcaccgtc 15229231  T
Q  282 tgacaacccaaacaaaggt 300  Q
    | |||||||||||||||||    
T  15229230 taacaacccaaacaaaggt 15229212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 83 - 300
Target Start/End: Complemental strand, 15239555 - 15239337
Alignment:
Q  83 gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact-nnnnnnnnn 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  15239555 gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatactaaaaataaaa 15239456  T
Q  182 tttgatacactaatattccatgaagcatggacaccttcaaaattaatcgtgtcttcatgtctgacatctgtatgatactcgtacaatacgtgtcaccgtc 281  Q
    ||||||||| |||||||  ||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||||||| ||||||||| |||    
T  15239455 tttgatacattaatattgaatgaagcatggacacctccaaaattaatcgtgtctccatgtccgacatttgtatgatactcgtacaacacgtgtcactgtc 15239356  T
Q  282 tgacaacccaaacaaaggt 300  Q
    | |||||||||||||||||    
T  15239355 tcacaacccaaacaaaggt 15239337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 17544497 - 17544797
Alignment:
Q  1 aacaagtgcttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgtaaggtgtaaaatacatctttctc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17544497 aacaagtgcttgttatgaaggtaaaaaaggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgtaaggtgtaaaatacatctttctc 17544596  T
Q  101 aaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact-nnnnnnnnntttgatacactaatattc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||| |||||||     
T  17544597 aaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatactaaaaataaaatttgatacattaatattg 17544696  T
Q  200 catgaagcatggacaccttcaaaattaatcgtgtcttcatgtctgacatctgtatgatactcgtacaatacgtgtcaccgtctgacaacccaaacaaagg 299  Q
     ||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  17544697 aatgaagcatggacacctccaaaattaatcgtgtctccatgtccgacatttgtatgatactcgtacaacacgtgtcactgtctcacaacccaaacaaagg 17544796  T
Q  300 t 300  Q
    |    
T  17544797 t 17544797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 9045229 - 9045163
Alignment:
Q  9 cttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagtt 75  Q
    ||||||| |||||||||||| ||||||||||||| |||  |||||||||| || |||||||||||||    
T  9045229 cttgttaagaaggtaaaaatagaaataagtgataaatttaaagtaaaaaaagttaatttctaaagtt 9045163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 35507145 - 35507203
Alignment:
Q  17 gaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagtt 75  Q
    |||| ||||||||||||||||||||| |||  | |||||||| ||||||||||| ||||    
T  35507145 gaagctaaaaatggaaataagtgataaattcaaggtaaaaaaagtcaatttctagagtt 35507203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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