View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15848_low_4 (Length: 305)

Name: NF15848_low_4
Description: NF15848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15848_low_4
NF15848_low_4
[»] chr2 (7 HSPs)
chr2 (1-289)||(39814547-39814835)
chr2 (1-169)||(12987338-12987513)
chr2 (185-290)||(39921978-39922083)
chr2 (185-280)||(39910807-39910902)
chr2 (196-283)||(39927403-39927489)
chr2 (13-53)||(25059704-25059744)
chr2 (13-53)||(25064503-25064543)
[»] chr1 (8 HSPs)
chr1 (1-179)||(5721867-5722045)
chr1 (1-176)||(11359328-11359504)
chr1 (18-54)||(52975688-52975724)
chr1 (14-50)||(1280528-1280564)
chr1 (17-50)||(49105523-49105556)
chr1 (18-50)||(17508545-17508577)
chr1 (12-52)||(35764138-35764178)
chr1 (18-54)||(43904365-43904401)
[»] chr5 (6 HSPs)
chr5 (1-176)||(18691051-18691227)
chr5 (1-176)||(41108992-41109168)
chr5 (1-176)||(33215073-33215247)
chr5 (77-176)||(41109725-41109824)
chr5 (13-49)||(22726498-22726534)
chr5 (17-54)||(33214546-33214583)
[»] chr7 (4 HSPs)
chr7 (1-179)||(17165849-17166031)
chr7 (26-170)||(41483079-41483230)
chr7 (96-168)||(7975991-7976063)
chr7 (14-50)||(29250494-29250530)
[»] chr8 (1 HSPs)
chr8 (1-181)||(36241071-36241251)
[»] chr3 (5 HSPs)
chr3 (1-170)||(25184746-25184916)
chr3 (8-170)||(35390487-35390656)
chr3 (5-52)||(55380341-55380388)
chr3 (18-53)||(42428432-42428467)
chr3 (18-50)||(9678749-9678781)
[»] chr4 (6 HSPs)
chr4 (5-168)||(25542295-25542465)
chr4 (13-52)||(11840902-11840941)
chr4 (17-52)||(48879617-48879652)
chr4 (11-52)||(40578890-40578931)
chr4 (13-50)||(40868891-40868928)
chr4 (18-46)||(45019069-45019097)
[»] chr6 (5 HSPs)
chr6 (1-53)||(10857321-10857373)
chr6 (1-75)||(832047-832122)
chr6 (96-176)||(832201-832281)
chr6 (13-53)||(23112484-23112524)
chr6 (13-53)||(23117282-23117322)
[»] scaffold0245 (1 HSPs)
scaffold0245 (14-50)||(6206-6242)
[»] scaffold0229 (1 HSPs)
scaffold0229 (14-50)||(6536-6572)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 39814547 - 39814835
Alignment:
Q  1 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttatatcaataataatagatcattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814547 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttatatcaataataatagatcattc 39814646  T
Q  101 ctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatctatcaatgtccttcacaatataaagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814647 ctttattattatgcaataatctcccaaataccatagaattatcatctgcatttattcacatctgaaccagaatctatcaatgtccttcacaatataaagg 39814746  T
Q  201 accgcgatgtatctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaactatataat 289  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814747 actgcgatgtatctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaactatataat 39814835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 12987513 - 12987338
Alignment:
Q  1 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttg-gtacttttctgcagttactttcttatatcaataataatagat---- 95  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||| | |||||||||||||| ||        
T  12987513 tttgtatgtgggttggtttgggagagactaggctctctgattcctagaggttgattacttttctgcagttactttcctgtatcaataataatacatcacg 12987414  T
Q  96 --cattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaacca 169  Q
      |||||| |||||||||||| ||||||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  12987413 tgcattcccttattattatgctataatctcccaaataccatagaattatcattggtatttattcatatctgaacca 12987338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 39921978 - 39922083
Alignment:
Q  185 cttcacaatataaaggaccgcgatgtatctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaactat 284  Q
    ||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39921978 cttcacaatataaaggaccacgatgcagctgttactgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaagtat 39922077  T
Q  285 ataatt 290  Q
    ||||||    
T  39922078 ataatt 39922083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 39910807 - 39910902
Alignment:
Q  185 cttcacaatataaaggaccgcgatgtatctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaa 280  Q
    ||||||||||||||||||| | ||| | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  39910807 cttcacaatataaaggaccacaatgcagctgttaccatgactaatatttaaaaccttgcttctcacagttaatcaataaaatatacttaacataaa 39910902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 39927403 - 39927489
Alignment:
Q  196 aaaggaccgcgatgtatctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaatatacttaatataaacta 283  Q
    ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  39927403 aaaggactgcgatgcagctgttaccgtgactaatatttaaaaccttgcttctcacaattaatcaataaaat-tacttaatgtaaacta 39927489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 25059704 - 25059744
Alignment:
Q  13 ttggtttgggagagactaggctctctaattcctagaggttg 53  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  25059704 ttggtttgggagattctaggctctctaagtcctagaggttg 25059744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 25064503 - 25064543
Alignment:
Q  13 ttggtttgggagagactaggctctctaattcctagaggttg 53  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  25064503 ttggtttgggagattctaggctctctaagtcctagaggttg 25064543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 5721867 - 5722045
Alignment:
Q  1 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttatatcaataataatagatcattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5721867 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggtacttttctgcagttactttcttatatcaataataatagatcattc 5721966  T
Q  101 ctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatctatca 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5721967 ctttattattatgcaataatctcccaaataccatagaattatcatcggtatttattcacatctgaaccagaatctatca 5722045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 11359504 - 11359328
Alignment:
Q  1 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcatt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11359504 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcttatatcaataataatagatcatt 11359405  T
Q  100 cctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 176  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11359404 cctttattattatgcaataatctaccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 11359328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 52975724 - 52975688
Alignment:
Q  18 ttgggagagactaggctctctaattcctagaggttgg 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  52975724 ttgggagagactaggctctctaattcctagaggttgg 52975688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 1280528 - 1280564
Alignment:
Q  14 tggtttgggagagactaggctctctaattcctagagg 50  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1280528 tggtttgggagagactaggctctctgattcctagagg 1280564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 49105523 - 49105556
Alignment:
Q  17 tttgggagagactaggctctctaattcctagagg 50  Q
    |||||||||||||||||||||| |||||||||||    
T  49105523 tttgggagagactaggctctctgattcctagagg 49105556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 17508545 - 17508577
Alignment:
Q  18 ttgggagagactaggctctctaattcctagagg 50  Q
    ||||||||||| |||||||||||||||||||||    
T  17508545 ttgggagagacaaggctctctaattcctagagg 17508577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 35764138 - 35764178
Alignment:
Q  12 gttggtttgggagagactaggctctctaattcctagaggtt 52  Q
    |||||||||||||||||||| |||| ||||||||| |||||    
T  35764138 gttggtttgggagagactagactctataattcctaaaggtt 35764178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 43904365 - 43904401
Alignment:
Q  18 ttgggagagactaggctctctaattcctagaggttgg 54  Q
    ||||||||||||||||||||||||| | |||||||||    
T  43904365 ttgggagagactaggctctctaatttcaagaggttgg 43904401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 18691051 - 18691227
Alignment:
Q  1 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcatt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18691051 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcttatatcaataataatagatcatt 18691150  T
Q  100 cctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 176  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18691151 cctttattattatgcaataatctaccaaataccatagaattatcatcggtatttattcacatctgaaccagaatcta 18691227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 41108992 - 41109168
Alignment:
Q  1 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcatt 99  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41108992 tttgtatgtgggttggtttgggagagactgggctctctaattcctagaggttggttacttttctgcagttactttcttatatcaataataatagatcatt 41109091  T
Q  100 cctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 176  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41109092 cctttattattatgcaataatctaccaaataccatagaattatcatcggtatttattcacatctgaaccagaatcta 41109168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 33215247 - 33215073
Alignment:
Q  1 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcatt 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||||| |  |||||    
T  33215247 tttgtatgtgggttggtttgggagagactaggctctctaatttctagaggttggttacttttctgcagttactttcatgtatcaataataaca--tcatt 33215150  T
Q  100 cctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 176  Q
    || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  33215149 cccttattattatgcaataatctcccaaataccattgaattatcatcggtatttattcacatctgaaccagtatcta 33215073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 41109725 - 41109824
Alignment:
Q  77 tatatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41109725 tatatcaataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatcatcggtatttattcacatctgaaccagaatcta 41109824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 22726498 - 22726534
Alignment:
Q  13 ttggtttgggagagactaggctctctaattcctagag 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  22726498 ttggtttgggagagactaggctctctaattcctagag 22726534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 33214546 - 33214583
Alignment:
Q  17 tttgggagagactaggctctctaattcctagaggttgg 54  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  33214546 tttgggagagactagggtctctaattcctaaaggttgg 33214583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 17166031 - 17165849
Alignment:
Q  1 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatat---caataataatagatc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||   ||||||||||| |||    
T  17166031 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctgtatgatcaataataatatatc 17165932  T
Q  97 attcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatctatca 179  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  17165931 attcccttattattatgcaataatctcccaaataccatagaattatcatcgatatttattcacatctgaaccagtatctatca 17165849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 41483079 - 41483230
Alignment:
Q  26 gactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatca------ttcctttattattatgcaata 118  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||| |||||||||| ||||      |||| ||||||||||||||||    
T  41483079 gactaggctctctaattcctagaggtaggttacttttctgcagttactttcctgtatgaataataatacatcacgtgcattcccttattattatgcaata 41483178  T
Q  119 atctcccaaataccatagaattatcatctgtatttattcacatctgaaccag 170  Q
    |||||||||||||||||||||||||||  |||||||| || |||||||||||    
T  41483179 atctcccaaataccatagaattatcattggtatttatacatatctgaaccag 41483230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 7975991 - 7976063
Alignment:
Q  96 cattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaacc 168  Q
    |||||||| |||||| |||||||||||||||| |||   |||||||||||  ||||||||||| |||||||||    
T  7975991 cattccttgattattttgcaataatctcccaagtactgaagaattatcattggtatttattcatatctgaacc 7976063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 29250494 - 29250530
Alignment:
Q  14 tggtttgggagagactaggctctctaattcctagagg 50  Q
    ||||||||||||||||||||||||| |||||||||||    
T  29250494 tggtttgggagagactaggctctctgattcctagagg 29250530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 36241251 - 36241071
Alignment:
Q  1 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttgg-tacttttctgcagttactttcttatatcaataataatagatcatt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||    
T  36241251 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctgtatcaataataatacatcatt 36241152  T
Q  100 cctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatctatcaat 181  Q
    || ||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||| ||||    
T  36241151 cccttattattatgcaat-atctcccaaataccatagaattatcattggtatttattcacatttgaaccagtatctaacaat 36241071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 25184746 - 25184916
Alignment:
Q  1 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcatt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | ||||||    
T  25184746 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctatatcaataataaaacatcatt 25184845  T
Q  100 cctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccag 170  Q
    |  ||||||||||||||||||||||||||||||||||| ||||||    ||||||||||||||||||||||    
T  25184846 cgcttattattatgcaataatctcccaaataccatagatttatcagtgatatttattcacatctgaaccag 25184916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 35390487 - 35390656
Alignment:
Q  8 gtgggttggtttgggagagactaggctctctaattcctagaggttgg-tacttttctgcagttactttcttatatcaataataatagat------cattc 100  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||| | | |||||||||||||| ||      ||||     
T  35390487 gtgggttggtttgggagagactaggctctctaactcctaaaggttggttacctttctgcagttacttacatgtatcaataataatacatcacatgcattt 35390586  T
Q  101 ctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccag 170  Q
    | |||||||| | ||||||||| ||||||||||||||||||||||  ||||||||  | |||||||||||    
T  35390587 ccttattattttacaataatctaccaaataccatagaattatcattggtatttatagatatctgaaccag 35390656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 55380388 - 55380341
Alignment:
Q  5 tatgtgggttggtttgggagagactaggctctctaattcctagaggtt 52  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55380388 tatgttggttggtttgggagagactaggctctctaattcctagaggtt 55380341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 42428432 - 42428467
Alignment:
Q  18 ttgggagagactaggctctctaattcctagaggttg 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  42428432 ttgggagagactaggctctctaattcctagaggttg 42428467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 9678749 - 9678781
Alignment:
Q  18 ttgggagagactaggctctctaattcctagagg 50  Q
    ||||||||||||||||||||| |||||||||||    
T  9678749 ttgggagagactaggctctctgattcctagagg 9678781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 25542465 - 25542295
Alignment:
Q  5 tatgtgggttggtttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttcttatatcaataataatagatcattcctt 103  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||| | |||||||||||||| |||||||| |    
T  25542465 tatgtgggttggtttgggagggactaggctctctaattgctagaggttggttacttttatgcagttactttcctgtatcaataataatacatcattccct 25542366  T
Q  104 tattattatgcaataatctcccaaataccataga------attatcatctgtatttattcacatctgaacc 168  Q
    ||||||||||||||||||||||||||||||||||      ||||||||| |||||||||||||||||||||    
T  25542365 tattattatgcaataatctcccaaataccatagaattagaattatcatcggtatttattcacatctgaacc 25542295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 11840902 - 11840941
Alignment:
Q  13 ttggtttgggagagactaggctctctaattcctagaggtt 52  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  11840902 ttggtttgggagagactaggttctctaattcctagaggtt 11840941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 48879652 - 48879617
Alignment:
Q  17 tttgggagagactaggctctctaattcctagaggtt 52  Q
    |||||||||||||||||||||||| |||||||||||    
T  48879652 tttgggagagactaggctctctaagtcctagaggtt 48879617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 40578931 - 40578890
Alignment:
Q  11 ggttggtttgggagagactaggctctctaattcctagaggtt 52  Q
    |||||| ||||||||||||| |||||||||||||||| ||||    
T  40578931 ggttgggttgggagagactaagctctctaattcctagtggtt 40578890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 40868891 - 40868928
Alignment:
Q  13 ttggtttgggagagactaggctctctaattcctagagg 50  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  40868891 ttggtttgagagagaataggctctctaattcctagagg 40868928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 45019097 - 45019069
Alignment:
Q  18 ttgggagagactaggctctctaattccta 46  Q
    |||||||||||||||||||||||||||||    
T  45019097 ttgggagagactaggctctctaattccta 45019069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10857373 - 10857321
Alignment:
Q  1 tttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttg 53  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10857373 tttgtatgttggttggtttgggagagactaggctctctaattcctagaggttg 10857321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 832047 - 832122
Alignment:
Q  1 tttgtatgtgggttggtttgggagagactaggctctctaattcctagagg-ttggtacttttctgcagttactttc 75  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| || |||| |||||||||||||    
T  832047 tttgtatgttggttggtttgggagagactaggctctataattcctagaggtttgttagttttatgcagttactttc 832122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 832201 - 832281
Alignment:
Q  96 cattcctttattattatgcaataatctcccaaataccatagaattatcatctgtatttattcacatctgaaccagaatcta 176  Q
    |||||| |||||||||| |||||||| |||||||| ||||||||||||||  ||||||| |   ||||||||||| |||||    
T  832201 cattcccttattattatccaataatcccccaaatatcatagaattatcattggtatttaatattatctgaaccagtatcta 832281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 23112484 - 23112524
Alignment:
Q  13 ttggtttgggagagactaggctctctaattcctagaggttg 53  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  23112484 ttggtttgggagattctaggctctctaagtcctagaggttg 23112524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 23117282 - 23117322
Alignment:
Q  13 ttggtttgggagagactaggctctctaattcctagaggttg 53  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  23117282 ttggtttgggagattctaggctctctaagtcctagaggttg 23117322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 6206 - 6242
Alignment:
Q  14 tggtttgggagagactaggctctctaattcctagagg 50  Q
    ||||||||||||||||||||||||| |||||||||||    
T  6206 tggtttgggagagactaggctctctgattcctagagg 6242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 6536 - 6572
Alignment:
Q  14 tggtttgggagagactaggctctctaattcctagagg 50  Q
    ||||||||||||||||||||||||| |||||||||||    
T  6536 tggtttgggagagactaggctctctgattcctagagg 6572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University