View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15849_high_15 (Length: 308)

Name: NF15849_high_15
Description: NF15849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15849_high_15
NF15849_high_15
[»] chr4 (3 HSPs)
chr4 (1-296)||(18342689-18342984)
chr4 (1-235)||(48288629-48288862)
chr4 (233-293)||(41737450-41737510)
[»] chr2 (1 HSPs)
chr2 (36-296)||(36840497-36840757)
[»] scaffold0002 (2 HSPs)
scaffold0002 (46-296)||(164380-164630)
scaffold0002 (1-213)||(277417-277629)
[»] chr6 (1 HSPs)
chr6 (46-296)||(14249096-14249346)
[»] scaffold1779 (1 HSPs)
scaffold1779 (1-296)||(733-1028)
[»] chr3 (1 HSPs)
chr3 (189-296)||(46699127-46699234)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 18342689 - 18342984
Alignment:
Q  1 ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18342689 ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttc 18342788  T
Q  101 tttatcaatgggaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcact 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18342789 tttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcact 18342888  T
Q  201 tcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaacataagcataccgtcgattactagctcctatg 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18342889 tcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg 18342984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 48288629 - 48288862
Alignment:
Q  1 ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaat----tcgagttccttttggatttc 96  Q
    |||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||  ||||||     |||||||||||||| |||||    
T  48288629 ataatacctcggatgttaatgaaactatttaagtgaaatttacctgtctcaattctcgggctattgcaaaaaaaaaaaaatcgagttccttttgaatttc 48288728  T
Q  97 cttctttatcaatgggaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgat 196  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||    ||| ||||  |  ||| ||    
T  48288729 cttctttatcaatgagaaccgccgcattatcatcatactttattattatatcatcaccacgttttagttctttacaa----gtataatt-gactcctaat 48288823  T
Q  197 cacttcagatctttctaaagatgaatttggtactgcttt 235  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  48288824 cacttcagatctttctaaagatgaatttgatactccttt 48288862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 41737510 - 41737450
Alignment:
Q  233 ttttttgattacagcaacaacaatgtcaccaacataagcataccgtcgattactagctcct 293  Q
    |||||| ||||| ||||||| | |||||||||||||||||||  | ||||||||| |||||    
T  41737510 tttttttattactgcaacaaaattgtcaccaacataagcataatgccgattactatctcct 41737450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 36 - 296
Target Start/End: Original strand, 36840497 - 36840757
Alignment:
Q  36 aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgggaaccgccgcattatcatcatact 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36840497 aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact 36840596  T
Q  136 ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840597 ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt 36840696  T
Q  236 tttgattacagcaacaacaatgtcaccaacataagcataccgtcgattactagctcctatg 296  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36840697 tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg 36840757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 46 - 296
Target Start/End: Complemental strand, 164630 - 164380
Alignment:
Q  46 gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgggaaccgccgcattatcatcatactttattattat 145  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  164630 gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat 164531  T
Q  146 accattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca 245  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  164530 accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca 164431  T
Q  246 gcaacaacaatgtcaccaacataagcataccgtcgattactagctcctatg 296  Q
     |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  164430 tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg 164380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 277417 - 277629
Alignment:
Q  1 ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttc 100  Q
    ||||||| || || ||||||||||||||||| || ||||| || | |||||||||   ||| || |||  ||||| ||||||||||||||| || ||||     
T  277417 ataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgccttt 277516  T
Q  101 tttatcaatgggaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcact 200  Q
    || ||||||   |||||| ||||| ||||||||    ||||||||||| |     | ||| | ||||||||| ||||||||||||||||| |  || |||    
T  277517 ttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattact 277616  T
Q  201 tcagatctttcta 213  Q
    || ||||||||||    
T  277617 tcggatctttcta 277629  T

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Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 46 - 296
Target Start/End: Original strand, 14249096 - 14249346
Alignment:
Q  46 gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgggaaccgccgcattatcatcatactttattattat 145  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  14249096 gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat 14249195  T
Q  146 accattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca 245  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  14249196 accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca 14249295  T
Q  246 gcaacaacaatgtcaccaacataagcataccgtcgattactagctcctatg 296  Q
     |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  14249296 tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg 14249346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1779 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 1028 - 733
Alignment:
Q  1 ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttc 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||   ||||||||||||||||||||||||||||||    
T  1028 ataatacctcgggagctaatgaaactattttagtgaaatttaactgtctcaattcccgggcgatcgcaccaaaaattcgagttccttttggatttccttc 929  T
Q  101 tttatcaatgggaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcact 200  Q
    || |||||||  ||| || ||||| ||||||||   |||||| || || ||    ||||| ||||||||||||||||||||||||||||| |||||||||    
T  928 ttgatcaatgacaacggcagcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacaagtacgtacaattacagctctgatcact 829  T
Q  201 tcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaacataagcataccgtcgattactagctcctatg 296  Q
    || |||||||||| || || ||||||||||||||  ||||| |||||||||| || |||||||| || |||||| || ||||||||||||||||||    
T  828 tctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataacgtcaccaatatgagcatatcggcgattactagctcctatg 733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 189 - 296
Target Start/End: Original strand, 46699127 - 46699234
Alignment:
Q  189 gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaacataagcataccgtcgattactag 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46699127 gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag 46699226  T
Q  289 ctcctatg 296  Q
    ||||||||    
T  46699227 ctcctatg 46699234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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