View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15849_high_5 (Length: 363)

Name: NF15849_high_5
Description: NF15849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15849_high_5
NF15849_high_5
[»] chr5 (9 HSPs)
chr5 (34-363)||(13447067-13447396)
chr5 (46-363)||(13419516-13419833)
chr5 (101-363)||(13426407-13426669)
chr5 (89-351)||(13413183-13413445)
chr5 (120-240)||(13388988-13389108)
chr5 (120-240)||(13454143-13454263)
chr5 (120-241)||(13385167-13385288)
chr5 (294-348)||(13454035-13454089)
chr5 (287-360)||(13393562-13393635)
[»] chr4 (2 HSPs)
chr4 (274-348)||(47601353-47601427)
chr4 (131-167)||(47601534-47601570)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 34 - 363
Target Start/End: Complemental strand, 13447396 - 13447067
Alignment:
Q  34 tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg 133  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447396 tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttcgttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg 13447297  T
Q  134 ggaagcaaagtaaaaaagtttaaagttggagacagagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgaga 233  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13447296 ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgaga 13447197  T
Q  234 attactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggaggtttccccgactcaatggttgcagacgagcactt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13447196 attactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt 13447097  T
Q  334 tgtgattcgcattcctgatagcttacctct 363  Q
    ||||||||||||||||||||||||||||||    
T  13447096 tgtgattcgcattcctgatagcttacctct 13447067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 46 - 363
Target Start/End: Complemental strand, 13419833 - 13419516
Alignment:
Q  46 aagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagta 145  Q
    |||||| |||||| ||||||||| |||||||| |||||| | || ||||||||  ||||| |||||| ||||| ||||||| ||||| ||||||||||||    
T  13419833 aagaaatgagtagtaaataattgttcaatttgtttataatttatttaataaatgcaggcatgaacttgcgggtatagtaaccgaggttggaagcaaagta 13419734  T
Q  146 aaaaagtttaaagttggagacagagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcacca 245  Q
     ||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||  |||||||||| |||||| |||||||||||||| | |    
T  13419733 gaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaa 13419634  T
Q  246 aatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggaggtttccccgactcaatggttgcagacgagcactttgtgattcgcat 345  Q
     || |||    ||||    ||  |||| ||||| ||||||  |||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  13419633 catttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcat 13419534  T
Q  346 tcctgatagcttacctct 363  Q
    ||||||||||||||||||    
T  13419533 tcctgatagcttacctct 13419516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 101 - 363
Target Start/End: Complemental strand, 13426669 - 13426407
Alignment:
Q  101 aggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacagagtaggggtgggatacatggttgattcatgtc 200  Q
    ||||| |||||| ||||| | ||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  13426669 aggcatgaacttgcgggtattgtaacagaggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtc 13426570  T
Q  201 gttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggagg 300  Q
    |||| || ||||||||||| || ||| |||||||||||||| || || | ||    ||||    || ||||| ||||| |||||   |||| ||||||||    
T  13426569 gttcatgcgaaaattgtgcggaagatcttgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggagg 13426470  T
Q  301 tttccccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctct 363  Q
    ||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13426469 ttattccgactcaatggttgcagatgagcactttgtgattcgcattcctgatagcttacctct 13426407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 89 - 351
Target Start/End: Complemental strand, 13413445 - 13413183
Alignment:
Q  89 tgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacagagtaggggtgggatacatgg 188  Q
    ||||||||||| ||||| || ||| ||||| |||||||||| || |||||||||||  | ||||||||||||||||||| |||||| || || ||| ||     
T  13413445 tgtaataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttga 13413346  T
Q  189 ttgattcatgtcgttcttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactat 288  Q
    ||||||||||||| || ||  || |||||   ||| || |||||||||||||| |||||| |      ||||    ||  |||| ||||| ||| ||  |    
T  13413345 ttgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaatttgtagtcacatgtggtgccaagtatcgtgatggaaccgt 13413246  T
Q  289 cacctatggaggtttccccgactcaatggttgcagacgagcactttgtgattcgcattcctga 351  Q
    ||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  13413245 cacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctga 13413183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 13388988 - 13389108
Alignment:
Q  120 tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacagagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc 219  Q
    |||| ||| ||||||||||||||||| ||||||| || |||||||||| |||||| || || |||||||||||||||||||| || ||| |||||||||     
T  13388988 tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgt 13389087  T
Q  220 cgacgatattgagaattactg 240  Q
     ||| || |||| ||||||||    
T  13389088 tgacaatcttgaaaattactg 13389108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 13454263 - 13454143
Alignment:
Q  120 tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacagagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc 219  Q
    |||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||| | |||||||||| ||||  || ||| |||||||||     
T  13454263 tagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgt 13454164  T
Q  220 cgacgatattgagaattactg 240  Q
     ||  || |||||||||||||    
T  13454163 tgataatcttgagaattactg 13454143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 13385167 - 13385288
Alignment:
Q  120 tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacagagtaggggtgggatacatggttgattcatgtcgttcttgtgaaaattgtgc 219  Q
    |||| ||| ||||||||||||||||| ||||||| || |||||||||| |||||| || || |||||  ||||||||||||| || ||| |||||||||     
T  13385167 tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgt 13385266  T
Q  220 cgacgatattgagaattactgc 241  Q
     ||| || |||| |||||||||    
T  13385267 tgacaatcttgaaaattactgc 13385288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 13454089 - 13454035
Alignment:
Q  294 atggaggtttccccgactcaatggttgcagacgagcactttgtgattcgcattcc 348  Q
    ||||||| ||| | |||||||||||| | ||||||||||||||| ||||||||||    
T  13454089 atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattcc 13454035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 13393562 - 13393635
Alignment:
Q  287 atcacctatggaggtttccccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacc 360  Q
    ||||| |||||||| | | | ||||||||||||||||| ||||||||| |  ||| |||||||||| |||||||    
T  13393562 atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttacc 13393635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 348
Target Start/End: Complemental strand, 47601427 - 47601353
Alignment:
Q  274 tcgtggtggcactatcacctatggaggtttccccgactcaatggttgcagacgagcactttgtgattcgcattcc 348  Q
    ||||| |||||| | ||| || ||||||| | | ||||||||||||| |||||||||||||||| ||| ||||||    
T  47601427 tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc 47601353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 47601570 - 47601534
Alignment:
Q  131 gtgggaagcaaagtaaaaaagtttaaagttggagaca 167  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  47601570 gtgggaagcaaagtagaaaagttcaaagttggagaca 47601534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University