View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15849_low_1 (Length: 298)
Name: NF15849_low_1
Description: NF15849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15849_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 130 - 287
Target Start/End: Complemental strand, 6729282 - 6729126
Alignment:
| Q |
130 |
tttcagtctcgccgtttcaactcctccacactacaatttttcctactccacaccaccctatcccaagtaccaaacaccaccatatttttgacgaacacat |
229 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
6729282 |
tttcagtttcgccatttcaactcctccacactacaatttttcctactccacaccaccctatcccacgtaccaaacaccaccatattttggacaaacacat |
6729183 |
T |
|
| Q |
230 |
aactcccacccaattgcaaatttccgtaacccaaaggttgagatggctagttttgatg |
287 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6729182 |
aactcccaccc-attgcaaatttccgtaacccaaaggttgagatggctagttttgatg |
6729126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 6729381 - 6729294
Alignment:
| Q |
13 |
tcatcacactaccccccttaccgtacctctttcgcaaacccaaacctatggctatttcactcagccgattgttaacacatcgatctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6729381 |
tcatcacactaccccccttaccgtacctctttcacaaacccaaacctatggctatttcactcagccgattgttaacacatcgatctat |
6729294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University