View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1584_high_17 (Length: 294)
Name: NF1584_high_17
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1584_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 5299653 - 5299922
Alignment:
| Q |
18 |
gttctaaattgcctcattacaaatcacacaagttaagggacatgtgacacctctactgtatctcgaacaaaattatatcgacggaggaatcatgtggggt |
117 |
Q |
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| T |
5299653 |
gttctaaattgcctcattacaaatcatacaagttaagggacatgtgacacctctactgtatctcgaacaaaattatattgacggaggaatcatgtggggt |
5299752 |
T |
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| Q |
118 |
gaaaatagacaataatttcaactaatttgtgacacctctattatactcttttccttgctctacaaatcaacaaaaggaaacaatcatttgtatcaatgta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5299753 |
gaaaatagacaataatttcaactaatttgtgacacctctattatactcttttccttgctctacaaatcaacaaaaggaaacaatcatttgtatcaatgta |
5299852 |
T |
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| Q |
218 |
ttgatagttgcacataccaagtgataactacatttccaaatgacatatcaaagtttagccgcatcctttg |
287 |
Q |
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| T |
5299853 |
ttgatagttgcacataccaagtgataactacatttccaaatgacatatcaaagtttagccacatcctttg |
5299922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 20667404 - 20667355
Alignment:
| Q |
156 |
tattatactcttttccttgctctacaaatcaacaaaaggaaacaatcattt |
206 |
Q |
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| T |
20667404 |
tattatactcatttccttgctctacaaatcagc-gaaggaaacaatcattt |
20667355 |
T |
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