View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1584_high_2 (Length: 556)
Name: NF1584_high_2
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1584_high_2 |
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| [»] scaffold0095 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 327
Target Start/End: Complemental strand, 44290254 - 44289941
Alignment:
| Q |
14 |
atatacttccacttttgactctgaataagcaagggtatgatccgctccacaaacaacagatacaatttgttgagcgtccaatgcactgagttgagtaggc |
113 |
Q |
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| T |
44290254 |
atatacttccacttttgactctgaataagcaagggtatgatccgctccacaaacaacagatacaatttgttgagcatccaatgcactgagttgagtaggc |
44290155 |
T |
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| Q |
114 |
aaaagtctatcatcagtatcaccatgacctaattgtccatcctctcctctaccccacgagcaaacaacatttccagctgaaaaaagatcaacatcaatcc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44290154 |
aaaagtctatcatcagtatcaccatgacctaattgtccatcctctcctctaccccacgagcaaacaacatttccagctgaaaaaagatcaacatcaatcc |
44290055 |
T |
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| Q |
214 |
ataaccacacaaactcaaaaacctatccattccactaaaaattaaaactttccacaacccagatagcagattttcagaatcacaacaaataaatcaaaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44290054 |
ataaccacacaaactcaaaaacctatccattccactaaaaattaaaactttccacaacccagatagcagattttcagaatcacagcaaataaatcaaaag |
44289955 |
T |
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| Q |
314 |
ggcatcattccatt |
327 |
Q |
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|||||||||||||| |
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| T |
44289954 |
ggcatcattccatt |
44289941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 426 - 535
Target Start/End: Complemental strand, 44289842 - 44289733
Alignment:
| Q |
426 |
gttaagcgttttgtggtattgagcttacagataagagcaacagagtggctaccaccagcagatataagaagaacacggcggggtggaggcggagaagcgg |
525 |
Q |
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| T |
44289842 |
gttaagctttttgtggtattgagcttacagataagagcaacagagtggctaccaccagcagatataagaagaacacggcggggtggaggcggagaagcgg |
44289743 |
T |
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| Q |
526 |
tggtggcttc |
535 |
Q |
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|||||||||| |
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| T |
44289742 |
tggtggcttc |
44289733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 44289949 - 44289895
Alignment:
| Q |
241 |
cattccactaaaaattaaaactttccacaacccagatagcagattttcagaatca |
295 |
Q |
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| T |
44289949 |
cattccattaaaaattcaaacttttcacaacccaaatggcagattttcagaatca |
44289895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 20053 - 20128
Alignment:
| Q |
117 |
agtctatcatcagtatcaccatgacctaattgtccatcctctcctctaccccacgagcaaacaacatttccagctg |
192 |
Q |
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| T |
20053 |
agtcgatcatcggtatcaccatggcctaattgtccgtcttctcctcggccccaagagcaaacaacattgccagctg |
20128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 500
Target Start/End: Original strand, 29147 - 29185
Alignment:
| Q |
462 |
gcaacagagtggctaccaccagcagatataagaagaaca |
500 |
Q |
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| T |
29147 |
gcaacagtgtggctagcaccagcagatataagaagaaca |
29185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 39411728 - 39411653
Alignment:
| Q |
117 |
agtctatcatcagtatcaccatgacctaattgtccatcctctcctctaccccacgagcaaacaacatttccagctg |
192 |
Q |
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| T |
39411728 |
agtcgatcatcggtatcaccatggcctaattgtccgtcttctcctcggccccaagagcaaacaacattgccagctg |
39411653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 500
Target Start/End: Complemental strand, 39410678 - 39410626
Alignment:
| Q |
448 |
gcttacagataagagcaacagagtggctaccaccagcagatataagaagaaca |
500 |
Q |
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|||||| || ||| ||||||| ||||||| ||||||||||||||||||||||| |
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| T |
39410678 |
gcttactgagaagtgcaacagtgtggctagcaccagcagatataagaagaaca |
39410626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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