View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1584_high_5 (Length: 412)

Name: NF1584_high_5
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1584_high_5
NF1584_high_5
[»] chr8 (2 HSPs)
chr8 (16-357)||(34869081-34869427)
chr8 (353-396)||(8013973-8014016)
[»] chr7 (7 HSPs)
chr7 (361-396)||(8203486-8203521)
chr7 (361-396)||(8215963-8215998)
chr7 (353-396)||(38876099-38876142)
chr7 (359-396)||(25876774-25876811)
chr7 (355-396)||(34591670-34591711)
chr7 (359-396)||(40705557-40705594)
chr7 (360-396)||(32542228-32542264)
[»] chr5 (4 HSPs)
chr5 (361-396)||(6469984-6470019)
chr5 (361-396)||(19034771-19034806)
chr5 (360-396)||(4156219-4156255)
chr5 (361-397)||(33280809-33280845)
[»] chr2 (1 HSPs)
chr2 (361-396)||(37094088-37094123)
[»] chr1 (3 HSPs)
chr1 (361-396)||(2138294-2138329)
chr1 (357-396)||(34270822-34270861)
chr1 (359-396)||(2482681-2482718)
[»] chr6 (1 HSPs)
chr6 (357-395)||(18893671-18893709)
[»] chr4 (2 HSPs)
chr4 (354-396)||(42348653-42348695)
chr4 (359-396)||(42724244-42724281)
[»] chr3 (1 HSPs)
chr3 (354-396)||(7156733-7156775)
[»] scaffold0007 (1 HSPs)
scaffold0007 (360-396)||(157164-157200)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 34869081 - 34869427
Alignment:
Q  16 atgaaggtgaaggtgtgatttgttattgtgggaattgaagggggtggagaagagtcagaagacaaacaggtgttgaaggtcaacttgtttatttgggact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34869081 atgaaggtgaaggtgtgatttgttattgtgggaattgaagggggtggagaagagtcagaagacaaacaggtgttgaaggtcaacttgtttttttgggact 34869180  T
Q  116 tcagacgcaaagaggaagtcccacatcgcctgcatttctcctctgttagcgtggcaaacttttaaataaacaacaagtcccctttatacaaaccagtcgt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34869181 tcagacgcaaagaggaagtcccacatcgcctgcatttctcctctgttagcgtggcaaacttttaaataaacaacaagtcccctttatacagaccagtcgt 34869280  T
Q  216 tttggggtaaatttacctctcccgagt-----attaaaatttgttgtccagcttggtattttgcctttactatgttatccacaacaata-------gtag 303  Q
    |||||||||||||||||||||||||||     |||||||||||| |||||||||||||||||||       |||||||| |||||||||       ||||    
T  34869281 tttggggtaaatttacctctcccgagtattaaattaaaatttgtcgtccagcttggtattttgc-------atgttatctacaacaatatgcaattgtag 34869373  T
Q  304 agcaaaaaagttgtgggttacattttcaagcagaataccgagtataggcaaaat 357  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  34869374 agcaaaaaagttgtgggttacatgttgaagcagaataccgagtataggcaaaat 34869427  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 396
Target Start/End: Complemental strand, 8014016 - 8013973
Alignment:
Q  353 aaaattaggagtttttctacttgcactttagttaatcatggttg 396  Q
    |||||| |||||||||||||||||||  ||||||||||||||||    
T  8014016 aaaatttggagtttttctacttgcaccctagttaatcatggttg 8013973  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 8203521 - 8203486
Alignment:
Q  361 gagtttttctacttgcactttagttaatcatggttg 396  Q
    |||||||||||||||||| |||||||||||||||||    
T  8203521 gagtttttctacttgcaccttagttaatcatggttg 8203486  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 8215998 - 8215963
Alignment:
Q  361 gagtttttctacttgcactttagttaatcatggttg 396  Q
    |||||||||||||||||| |||||||||||||||||    
T  8215998 gagtttttctacttgcaccttagttaatcatggttg 8215963  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 396
Target Start/End: Complemental strand, 38876142 - 38876099
Alignment:
Q  353 aaaattaggagtttttctacttgcactttagttaatcatggttg 396  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||    
T  38876142 aaaattaagagtttttctacttgcaccctagttaatcatggttg 38876099  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 25876774 - 25876811
Alignment:
Q  359 aggagtttttctacttgcactttagttaatcatggttg 396  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  25876774 aggagtttttctacttgcaccctagttaatcatggttg 25876811  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 396
Target Start/End: Original strand, 34591670 - 34591711
Alignment:
Q  355 aattaggagtttttctacttgcactttagttaatcatggttg 396  Q
    ||||| ||||||||||||||||||  ||||||||||||||||    
T  34591670 aattaagagtttttctacttgcaccctagttaatcatggttg 34591711  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 40705594 - 40705557
Alignment:
Q  359 aggagtttttctacttgcactttagttaatcatggttg 396  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  40705594 aggagtttttctacttgcaccctagttaatcatggttg 40705557  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 32542264 - 32542228
Alignment:
Q  360 ggagtttttctacttgcactttagttaatcatggttg 396  Q
    |||||||||||||||||||  ||||||||||||||||    
T  32542264 ggagtttttctacttgcaccctagttaatcatggttg 32542228  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 6470019 - 6469984
Alignment:
Q  361 gagtttttctacttgcactttagttaatcatggttg 396  Q
    |||||||||||||||||| |||||||||||||||||    
T  6470019 gagtttttctacttgcaccttagttaatcatggttg 6469984  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 19034806 - 19034771
Alignment:
Q  361 gagtttttctacttgcactttagttaatcatggttg 396  Q
    |||||||||||||||||| |||||||||||||||||    
T  19034806 gagtttttctacttgcaccttagttaatcatggttg 19034771  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 4156255 - 4156219
Alignment:
Q  360 ggagtttttctacttgcactttagttaatcatggttg 396  Q
    |||||||||||||||||||  ||||||||||||||||    
T  4156255 ggagtttttctacttgcaccctagttaatcatggttg 4156219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 33280809 - 33280845
Alignment:
Q  361 gagtttttctacttgcactttagttaatcatggttgt 397  Q
    ||||||||||||||||||  |||||||||||||||||    
T  33280809 gagtttttctacttgcaccctagttaatcatggttgt 33280845  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 396
Target Start/End: Original strand, 37094088 - 37094123
Alignment:
Q  361 gagtttttctacttgcactttagttaatcatggttg 396  Q
    ||||||||||||||||||| ||||||||||||||||    
T  37094088 gagtttttctacttgcactctagttaatcatggttg 37094123  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 2138329 - 2138294
Alignment:
Q  361 gagtttttctacttgcactttagttaatcatggttg 396  Q
    ||||||||||||||||||| ||||||||||||||||    
T  2138329 gagtttttctacttgcactctagttaatcatggttg 2138294  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 34270861 - 34270822
Alignment:
Q  357 ttaggagtttttctacttgcactttagttaatcatggttg 396  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  34270861 ttaggagtttttctacttgcaccctagttaatcatggttg 34270822  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 2482718 - 2482681
Alignment:
Q  359 aggagtttttctacttgcactttagttaatcatggttg 396  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  2482718 aggagtttttctacttgcaccctagttaatcatggttg 2482681  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 18893671 - 18893709
Alignment:
Q  357 ttaggagtttttctacttgcactttagttaatcatggtt 395  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  18893671 ttaggagtttttctacttgcaccctagttaatcatggtt 18893709  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 42348653 - 42348695
Alignment:
Q  354 aaattaggagtttttctacttgcactttagttaatcatggttg 396  Q
    |||||| ||||||||||||||||||  ||||||||||||||||    
T  42348653 aaattaagagtttttctacttgcaccctagttaatcatggttg 42348695  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 42724281 - 42724244
Alignment:
Q  359 aggagtttttctacttgcactttagttaatcatggttg 396  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  42724281 aggagtttttctacttgcaccctagttaatcatggttg 42724244  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 7156775 - 7156733
Alignment:
Q  354 aaattaggagtttttctacttgcactttagttaatcatggttg 396  Q
    |||||| ||||||||||||||||||  ||||||||||||||||    
T  7156775 aaattaagagtttttctacttgcaccctagttaatcatggttg 7156733  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 157200 - 157164
Alignment:
Q  360 ggagtttttctacttgcactttagttaatcatggttg 396  Q
    |||||||||||||||||||  ||||||||||||||||    
T  157200 ggagtttttctacttgcaccctagttaatcatggttg 157164  T

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