View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1584_low_13 (Length: 321)
Name: NF1584_low_13
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1584_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 12919633 - 12919945
Alignment:
| Q |
1 |
cattgggcatctcatgaaaaggtgttcagtagtttctgtttcagagaagcataaaaggcatacaggatcaagattcacgcctttttgttccagtcgccct |
100 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
12919633 |
cattggacatctcattaaaaggtgttcagtagtttctgtttcagagaagcataaagggcatacaggatcaagaatcacgcctttttgttccagtcggcct |
12919732 |
T |
|
| Q |
101 |
ctggttggcagaatgtcgcgggccagtcgccacaaaaagtttctagtaca-----gtttggagcatgcattttccagactgctctccaaagcctttggtc |
195 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12919733 |
ctggttggcagaatgttgcgggccagtcgccacaaaaagtttctagtcctagcctgtttggagcatgcattttccagtctgctctccaaagcctttggtc |
12919832 |
T |
|
| Q |
196 |
aatcatagaagaagcttcagggttctctctactgttgtcatcttgtatcgaatggtaagccgaacgcacagagtaattaccatttctttcccaatgcaaa |
295 |
Q |
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| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12919833 |
actcaaagatgaagcttcagggttctctctactgttgtcatcttgtatcgaatggtaagccgaacgcacagagtaattaccatttctttcccaatgcaaa |
12919932 |
T |
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| Q |
296 |
atccttttatcct |
308 |
Q |
| |
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||||||||||||| |
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| T |
12919933 |
atccttttatcct |
12919945 |
T |
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