View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1584_low_14 (Length: 313)
Name: NF1584_low_14
Description: NF1584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1584_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 1161005 - 1161289
Alignment:
| Q |
16 |
aaacatacctcaaccgaaaataatctcagaagggaggggaacaaacttgaaggagagatatctacgatataaacaataaacaaatgaatccctttcaata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1161005 |
aaacatacctcaaccgaaaataatctcagaagggaagggaacaaacttgaaggagagatatctacgatataaacaataaacaaatgaatccctttcaata |
1161104 |
T |
|
| Q |
116 |
aaaataagcaatttgatcacgtcatttaagtcactgattttgctnnnnnnnntatttttacagaattacataagtttatttatggaaattgatacaagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1161105 |
aaaataagcaatttgatcacgtcatttaagtcactgattttgctaaaaaaaatatttttacagaattacataagtttatttatggaaattgatacaagtt |
1161204 |
T |
|
| Q |
216 |
attttctnnnnnnnncaag-aagaagtttatttgtggaaaagtcaatgccagtggtcaattgacgtgatttgttaacaatacacctat |
302 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1161205 |
attttctaaaaaa---aagtaagaagtttatttgtggaaaagtcaatgccagtggtcaattgacgtgatttgttaacaatacacctat |
1161289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University